Uncovering ecological state dynamics with hidden Markov models

BT McClintock, R Langrock, O Gimenez, E Cam… - Ecology …, 2020 - Wiley Online Library
Ecological systems can often be characterised by changes among a finite set of underlying
states pertaining to individuals, populations, communities or entire ecosystems through time …

Hidden Markov models: Pitfalls and opportunities in ecology

R Glennie, T Adam, V Leos‐Barajas… - Methods in Ecology …, 2023 - Wiley Online Library
Abstract Hidden Markov models (HMMs) and their extensions are attractive methods for
analysing ecological data where noisy, multivariate measurements are made of a hidden …

Partial migration in fishes: definitions, methodologies and taxonomic distribution

BB Chapman, C Skov, K Hulthén… - Journal of fish …, 2012 - Wiley Online Library
Partial migration, where populations are composed of both migratory and resident
individuals, is extremely widespread across the animal kingdom. Researchers studying fish …

Statistical modelling of individual animal movement: an overview of key methods and a discussion of practical challenges

TA Patterson, A Parton, R Langrock… - AStA Advances in …, 2017 - Springer
With the influx of complex and detailed tracking data gathered from electronic tracking
devices, the analysis of animal movement data has recently emerged as a cottage industry …

Classifying movement behaviour in relation to environmental conditions using hidden Markov models

TA Patterson, M Basson, MV Bravington… - Journal of Animal …, 2009 - Wiley Online Library
Linking the movement and behaviour of animals to their environment is a central problem in
ecology. Through the use of electronic tagging and tracking (ETT), collection of in situ data …

State-space models for bio-loggers: A methodological road map

ID Jonsen, M Basson, S Bestley, MV Bravington… - Deep Sea Research …, 2013 - Elsevier
Ecologists have an unprecedented array of bio-logging technologies available to conduct in
situ studies of horizontal and vertical movement patterns of marine animals. These tracking …

Seasonal migration, site fidelity, and population structure of European seabass (Dicentrarchus labrax)

H de Pontual, K Heerah, J Goossens… - ICES Journal of …, 2023 - academic.oup.com
Large-scale electronic tagging is a very powerful tool to study how fish movements and
migrations shape the internal dynamics of populations. This knowledge, crucial for …

Geolocation of a demersal fish (Pacific cod) in a high-latitude island chain (Aleutian Islands, Alaska)

JK Nielsen, DR Bryan, KM Rand, MC Arostegui… - Animal …, 2023 - Springer
Background Fish geolocation methods are most effective when they are customized to
account for species behavior and study area characteristics. Here, we provide an example of …

Estimating animal behavior and residency from movement data

MW Pedersen, TA Patterson, UH Thygesen, H Madsen - Oikos, 2011 - Wiley Online Library
We present a process‐based approach to estimate residency and behavior from uncertain
and temporally correlated movement data collected with electronic tags. The estimation …

Acoustic and archival technologies join forces: A combination tag

J Goossens, M Woillez, A LeBris… - Methods in Ecology …, 2023 - Wiley Online Library
Technological advances are key to maximizing the information potential in electronic
tagging studies. Acoustic tags inform on the location of tagged animals when they are in the …