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Electrostatic interactions in protein structure, folding, binding, and condensation
Charged and polar groups, through forming ion pairs, hydrogen bonds, and other less
specific electrostatic interactions, impart important properties to proteins. Modulation of the …
specific electrostatic interactions, impart important properties to proteins. Modulation of the …
Protein stabilization by salt bridges: concepts, experimental approaches and clarification of some misunderstandings
HR Bosshard, DN Marti… - Journal of Molecular …, 2004 - Wiley Online Library
Salt bridges in proteins are bonds between oppositely charged residues that are sufficiently
close to each other to experience electrostatic attraction. They contribute to protein structure …
close to each other to experience electrostatic attraction. They contribute to protein structure …
Very fast empirical prediction and rationalization of protein pKa values
A very fast empirical method is presented for structure‐based protein pKa prediction and
rationalization. The desolvation effects and intra‐protein interactions, which cause variations …
rationalization. The desolvation effects and intra‐protein interactions, which cause variations …
Protein stability and surface electrostatics: a charged relationship
SS Strickler, AV Gribenko, AV Gribenko, TR Keiffer… - Biochemistry, 2006 - ACS Publications
Engineering proteins to withstand a broad range of conditions continues to be a coveted
objective, holding the potential to advance biomedicine, industry, and our understanding of …
objective, holding the potential to advance biomedicine, industry, and our understanding of …
Combining conformational flexibility and continuum electrostatics for calculating pKas in proteins
Protein stability and function relies on residues being in their appropriate ionization states at
physiological pH. In situ residue pK as also provides a sensitive measure of the local protein …
physiological pH. In situ residue pK as also provides a sensitive measure of the local protein …
The effect of net charge on the solubility, activity, and stability of ribonuclease Sa
KL Shaw, GR Grimsley, GI Yakovlev… - Protein …, 2001 - Wiley Online Library
The net charge and isoelectric pH (pI) of a protein depend on the content of ionizable groups
and their pK values. Ribonuclease Sa (RNase Sa) is an acidic protein with a pI= 3.5 that …
and their pK values. Ribonuclease Sa (RNase Sa) is an acidic protein with a pI= 3.5 that …
Protein thermostability calculations using alchemical free energy simulations
Thermal stability of proteins is crucial for both biotechnological and therapeutic applications.
Rational protein engineering therefore frequently aims at increasing thermal stability by …
Rational protein engineering therefore frequently aims at increasing thermal stability by …
MCCE2: Improving protein pKa calculations with extensive side chain rotamer sampling
Multiconformation continuum electrostatics (MCCE) explores different conformational
degrees of freedom in Monte Carlo calculations of protein residue and ligand pKas. Explicit …
degrees of freedom in Monte Carlo calculations of protein residue and ligand pKas. Explicit …
Physicochemical code for quinary protein interactions in Escherichia coli
X Mu, S Choi, L Lang, D Mowray, NV Dokholyan… - Proceedings of the …, 2017 - pnas.org
How proteins sense and navigate the cellular interior to find their functional partners remains
poorly understood. An intriguing aspect of this search is that it relies on diffusive encounters …
poorly understood. An intriguing aspect of this search is that it relies on diffusive encounters …
The stability of salt bridges at high temperatures: implications for hyperthermophilic proteins
AH Elcock - Journal of molecular biology, 1998 - Elsevier
Salt bridges have been proposed to play a crucial role in promoting hyperthermostability in
proteins, yet they appear to make little contribution to protein stability at room temperature …
proteins, yet they appear to make little contribution to protein stability at room temperature …