Electrostatic interactions in protein structure, folding, binding, and condensation

HX Zhou, X Pang - Chemical reviews, 2018 - ACS Publications
Charged and polar groups, through forming ion pairs, hydrogen bonds, and other less
specific electrostatic interactions, impart important properties to proteins. Modulation of the …

Protein stabilization by salt bridges: concepts, experimental approaches and clarification of some misunderstandings

HR Bosshard, DN Marti… - Journal of Molecular …, 2004 - Wiley Online Library
Salt bridges in proteins are bonds between oppositely charged residues that are sufficiently
close to each other to experience electrostatic attraction. They contribute to protein structure …

Very fast empirical prediction and rationalization of protein pKa values

H Li, AD Robertson, JH Jensen - Proteins: Structure, Function …, 2005 - Wiley Online Library
A very fast empirical method is presented for structure‐based protein pKa prediction and
rationalization. The desolvation effects and intra‐protein interactions, which cause variations …

Protein stability and surface electrostatics: a charged relationship

SS Strickler, AV Gribenko, AV Gribenko, TR Keiffer… - Biochemistry, 2006 - ACS Publications
Engineering proteins to withstand a broad range of conditions continues to be a coveted
objective, holding the potential to advance biomedicine, industry, and our understanding of …

Combining conformational flexibility and continuum electrostatics for calculating pKas in proteins

RE Georgescu, EG Alexov, MR Gunner - Biophysical journal, 2002 - cell.com
Protein stability and function relies on residues being in their appropriate ionization states at
physiological pH. In situ residue pK as also provides a sensitive measure of the local protein …

The effect of net charge on the solubility, activity, and stability of ribonuclease Sa

KL Shaw, GR Grimsley, GI Yakovlev… - Protein …, 2001 - Wiley Online Library
The net charge and isoelectric pH (pI) of a protein depend on the content of ionizable groups
and their pK values. Ribonuclease Sa (RNase Sa) is an acidic protein with a pI= 3.5 that …

Protein thermostability calculations using alchemical free energy simulations

D Seeliger, BL De Groot - Biophysical journal, 2010 - cell.com
Thermal stability of proteins is crucial for both biotechnological and therapeutic applications.
Rational protein engineering therefore frequently aims at increasing thermal stability by …

MCCE2: Improving protein pKa calculations with extensive side chain rotamer sampling

Y Song, J Mao, MR Gunner - Journal of computational …, 2009 - Wiley Online Library
Multiconformation continuum electrostatics (MCCE) explores different conformational
degrees of freedom in Monte Carlo calculations of protein residue and ligand pKas. Explicit …

Physicochemical code for quinary protein interactions in Escherichia coli

X Mu, S Choi, L Lang, D Mowray, NV Dokholyan… - Proceedings of the …, 2017 - pnas.org
How proteins sense and navigate the cellular interior to find their functional partners remains
poorly understood. An intriguing aspect of this search is that it relies on diffusive encounters …

The stability of salt bridges at high temperatures: implications for hyperthermophilic proteins

AH Elcock - Journal of molecular biology, 1998 - Elsevier
Salt bridges have been proposed to play a crucial role in promoting hyperthermostability in
proteins, yet they appear to make little contribution to protein stability at room temperature …