Detection of eQTL modules mediated by activity levels of transcription factors

W Sun, T Yu, KC Li - Bioinformatics, 2007 - academic.oup.com
Motivation: Studies of gene expression quantitative trait loci (eQTL) in different organisms
have shown the existence of eQTL hot spots: each being a small segment of DNA sequence …

Reconstruction of gene regulatory network via sparse optimization

J Lou, L Cui, W Qiu - arxiv preprint arxiv:2211.07375, 2022 - arxiv.org
In this paper, we tested several sparse optimization algorithms based on the public dataset
of the DREAM5 Gene Regulatory Network Inference Challenge. And we find that introducing …

[KNJIGA][B] Statistical strategies in eQTL studies

W Sun - 2007 - search.proquest.com
Statistical Strategies in eQTL Studies Page 1 Un IV ERS IT YOF Cal IF ORN IA Los Angeles
Statistical Strategies in eQTL Studies A dissertation submitted in partial satisfaction of the …

[PDF][PDF] Positional Co-Regulation of Transcription Factors in it Saccharomyces Cerevisiae

C Nguyen, CN Yoon, SK Han, DL Pham… - JOURNAL-KOREAN …, 2007 - researchgate.net
Several studies have focused on the transcriptional regulation of gene expression in S.
cerevisiae. Lee et al.[1] performed a genome-wide location analysis to investigate how …

Searching for Glycomics Role in Stem Cell Development

A Sorathiya, T Jucikas, S Piecewicz… - … Intelligence Methods for …, 2009 - Springer
We present a methodology to analyze zebrafish knock-out experiment replicated time series
microarray data. The knock-out experiment aimed to elucidate the transcriptomal regulators …

Entrainment of Bacterial Synthetic Oscillators using Proteolytic Queueing and Aperiodic Signaling

PL Hochendoner - 2015 - vtechworks.lib.vt.edu
The bulk of this thesis considers how biological rhythms (oscillators) can be made to
synchronize their rhythms by virtue of coupling to an external signal. Such externally …

[PDF][PDF] Using computational approach in understanding gene regulatory networks for antimicrobial peptide coding genes

M BRAHMACHARY - 2006 - core.ac.uk
Antimicrobial peptides (AMPs) play a key role in the innate immune response. They can be
ubiquitously found in a wide range of eukaryotes including mammals, amphibians, insects …

[NAVOD][C] 基于组学数据构建基因调控网络

束永俊, **勇, 朱延明 - 生物信息学, 2010