Computational methods for chromosome-scale haplotype reconstruction

S Garg - Genome biology, 2021 - Springer
High-quality chromosome-scale haplotype sequences of diploid genomes, polyploid
genomes, and metagenomes provide important insights into genetic variation associated …

HER2 low breast cancer: a new subtype or a trojan for cytotoxic drug delivery?

M Popović, T Silovski, M Križić… - International journal of …, 2023 - mdpi.com
Despite the great progress made in the understanding of the biological behavior of certain
types of invasive breast cancer, there is still no single histological or molecular classification …

A new method for CTC images recognition based on machine learning

B He, Q Lu, J Lang, H Yu, C Peng, P Bing… - … in Bioengineering and …, 2020 - frontiersin.org
Circulating tumor cells (CTCs) derived from primary tumors and/or metastatic tumors are
markers for tumor prognosis, and can also be used to monitor therapeutic efficacy and tumor …

Patterns of chromosomal instability and clonal heterogeneity in luminal B breast cancer: A pilot study

V Camargo-Herrera, G Castellanos, N Rangel… - International Journal of …, 2024 - mdpi.com
Chromosomal instability (CIN), defined by variations in the number or structure of
chromosomes from cell to cell, is recognized as a distinctive characteristic of cancer …

The progress in our understanding of CIN in breast cancer research

YY Liao, WM Cao - Frontiers in Oncology, 2023 - frontiersin.org
Chromosomal instability (CIN) is an important marker of cancer, which is closely related to
tumorigenesis, disease progression, treatment efficacy, and patient prognosis. However …

The updated 2018 American Society of Clinical Oncology/College of American Pathologists guideline on human epidermal growth factor receptor 2 interpretation in …

JW Woo, K Lee, YR Chung, MH Jang, S Ahn, SY Park - Human Pathology, 2020 - Elsevier
The aim of the study was to evaluate the impact of the updated 2018 American Society of
Clinical Oncology (ASCO)/College of American Pathologists (CAP) guideline on human …

[HTML][HTML] Osteosarcoma multi-omics landscape and subtypes

S Tang, RD Roberts, L Cheng, L Li - Cancers, 2023 - mdpi.com
Simple Summary Molecular subty** and therapeutic target identification in osteosarcoma
have been extremely challenging due to the high degree of heterogeneity in its genetic …

A new insight into the impact of copy number variations on cell cycle deregulation of luminal-type breast cancer

A Mahdi Khamaneh, D Jafari-Gharabaghlou… - Oncology …, 2025 - frontiersin.org
Breast cancer is the most prevalent neoplasm in women. ER+ (Luminal subtype),
representing over 70% of breast tumors, is a genetically diverse group. Structural and …

The landscape of chromosome instability in breast cancers and associations with the tumor mutation burden: an analysis of data from TCGA

IA Voutsadakis - Cancer Investigation, 2021 - Taylor & Francis
Background Chromosomal instability (CIN) is a defining characteristic of cancer and is part
of the genetic instability of cancer. CIN results in both numeric alterations of chromosomes …

A validation framework for somatic copy number detection in targeted sequencing panels

R Chandramohan, J Reuther, I Gandhi, H Voicu… - The Journal of Molecular …, 2022 - Elsevier
Somatic copy number alterations (SCNAs) in tumors are clinically significant diagnostic,
prognostic, and predictive biomarkers. SCNA detection from targeted next-generation …