Revisiting plant–microbe interactions and microbial consortia application for enhancing sustainable agriculture: a review

K Vishwakarma, N Kumar, C Shandilya… - Frontiers in …, 2020 - frontiersin.org
The present scenario of agricultural sector is dependent hugely on the use of chemical-
based fertilizers and pesticides that impact the nutritional quality, health status, and …

Uncultivated microbes in need of their own taxonomy

KT Konstantinidis, R Rosselló-Móra… - The ISME journal, 2017 - academic.oup.com
The great majority of microbial species remains uncultured, severely limiting their taxonomic
characterization and thus communication among scientists. Although Candidatus was …

Phylogenomics and Comparative Genomic Studies Robustly Support Division of the Genus Mycobacterium into an Emended Genus Mycobacterium and Four Novel …

RS Gupta, B Lo, J Son - Frontiers in microbiology, 2018 - frontiersin.org
The genus Mycobacterium contains 188 species including several major human pathogens
as well as numerous other environmental species. We report here comprehensive …

Anaerobic methane oxidation coupled to manganese reduction by members of the Methanoperedenaceae

AO Leu, C Cai, SJ McIlroy, G Southam… - The ISME …, 2020 - academic.oup.com
Anaerobic oxidation of methane (AOM) is a major biological process that reduces global
methane emission to the atmosphere. Anaerobic methanotrophic archaea (ANME) mediate …

Analysis of the microbiome: Advantages of whole genome shotgun versus 16S amplicon sequencing

R Ranjan, A Rani, A Metwally, HS McGee… - … and biophysical research …, 2016 - Elsevier
The human microbiome has emerged as a major player in regulating human health and
disease. Translational studies of the microbiome have the potential to indicate clinical …

A Genus Definition for Bacteria and Archaea Based on a Standard Genome Relatedness Index

RA Barco, GM Garrity, JJ Scott, JP Amend, KH Nealson… - MBio, 2020 - journals.asm.org
Genus assignment is fundamental in the characterization of microbes, yet there is currently
no unambiguous way to demarcate genera solely using standard genomic relatedness …

Birth mode is associated with earliest strain-conferred gut microbiome functions and immunostimulatory potential

L Wampach, A Heintz-Buschart, JV Fritz… - Nature …, 2018 - nature.com
The rate of caesarean section delivery (CSD) is increasing worldwide. It remains unclear
whether disruption of mother-to-neonate transmission of microbiota through CSD occurs and …

A methanotrophic archaeon couples anaerobic oxidation of methane to Fe (III) reduction

C Cai, AO Leu, GJ **e, J Guo, Y Feng, JX Zhao… - The ISME …, 2018 - academic.oup.com
Microbially mediated anaerobic oxidation of methane (AOM) is a key process in the
regulation of methane emissions to the atmosphere. Iron can serve as an electron acceptor …

Understanding and overcoming the pitfalls and biases of next-generation sequencing (NGS) methods for use in the routine clinical microbiological diagnostic …

SA Boers, R Jansen, JP Hays - European Journal of Clinical Microbiology …, 2019 - Springer
Recent advancements in next-generation sequencing (NGS) have provided the foundation
for modern studies into the composition of microbial communities. The use of these NGS …

Past, present and future of the boundaries of the Pseudomonas genus: proposal of Stutzerimonas gen. nov

J Lalucat, M Gomila, M Mulet, A Zaruma… - Systematic and applied …, 2022 - Elsevier
Pseudomonas is one the best studied bacterial genera, and it is the genus with the highest
number of species among the gram-negative bacteria. Pseudomonas spp. are widely …