Tet family proteins and 5-hydroxymethylcytosine in development and disease

L Tan, YG Shi - Development, 2012 - journals.biologists.com
Over the past few decades, DNA methylation at the 5-position of cytosine (5-methylcytosine,
5mC) has emerged as an important epigenetic modification that plays essential roles in …

Integrating genetics and epigenetics in breast cancer: biological insights, experimental, computational methods and therapeutic potential

C Cava, G Bertoli, I Castiglioni - BMC systems biology, 2015 - Springer
Background Development of human cancer can proceed through the accumulation of
different genetic changes affecting the structure and function of the genome. Combined …

Predicting genome-wide DNA methylation using methylation marks, genomic position, and DNA regulatory elements

W Zhang, TD Spector, P Deloukas, JT Bell… - Genome biology, 2015 - Springer
Background Recent assays for individual-specific genome-wide DNA methylation profiles
have enabled epigenome-wide association studies to identify specific CpG sites associated …

MicroRNA-195 and microRNA-378 mediate tumor growth suppression by epigenetical regulation in gastric cancer

H Deng, Y Guo, H Song, B **ao, W Sun, Z Liu, X Yu… - Gene, 2013 - Elsevier
The epigenetic regulation of microRNAs is one of several mechanisms underlying
carcinogenesis. We found that microRNA-195 (miR-195) and microRNA-378 (miR-378) …

Predicting the impact of non-coding variants on DNA methylation

H Zeng, DK Gifford - Nucleic acids research, 2017 - academic.oup.com
DNA methylation plays a crucial role in the establishment of tissue-specific gene expression
and the regulation of key biological processes. However, our present inability to predict the …

MRCNN: a deep learning model for regression of genome-wide DNA methylation

Q Tian, J Zou, J Tang, Y Fang, Z Yu, S Fan - BMC genomics, 2019 - Springer
Background Determination of genome-wide DNA methylation is significant for both basic
research and drug development. As a key epigenetic modification, this biochemical process …

Epigenetics of progression of chronic kidney disease: fact or fantasy?

MR Wing, A Ramezani, HS Gill, JM Devaney… - Seminars in …, 2013 - Elsevier
Epigenetic modifications are important in the normal functioning of the cell, from regulating
dynamic expression of essential genes and associated proteins to repressing those that are …

Extensive demethylation of normally hypermethylated CpG islands occurs in human atherosclerotic arteries

SA Castillo-Díaz, ME Garay-Sevilla… - International …, 2010 - spandidos-publications.com
Global DNA hypomethylation potentially leading to pro-atherogenic gene expression occurs
in atherosclerotic lesions. However, limited information is available on the genomic location …

A novel computational method for detecting DNA methylation sites with DNA sequence information and physicochemical properties

G Pan, L Jiang, J Tang, F Guo - International journal of molecular …, 2018 - mdpi.com
DNA methylation is an important biochemical process, and it has a close connection with
many types of cancer. Research about DNA methylation can help us to understand the …

CpGIMethPred: computational model for predicting methylation status of CpG islands in human genome

H Zheng, H Wu, J Li, SW Jiang - BMC medical genomics, 2013 - Springer
DNA methylation is an inheritable chemical modification of cytosine, and represents one of
the most important epigenetic events. Computational prediction of the DNA methylation …