Impacts of large herbivores on terrestrial ecosystems

RM Pringle, JO Abraham, TM Anderson, TC Coverdale… - Current Biology, 2023 - cell.com
Large herbivores play unique ecological roles and are disproportionately imperiled by
human activity. As many wild populations dwindle towards extinction, and as interest grows …

[HTML][HTML] Past, present, and future perspectives of environmental DNA (eDNA) metabarcoding: A systematic review in methods, monitoring, and applications of global …

KM Ruppert, RJ Kline, MS Rahman - Global Ecology and Conservation, 2019 - Elsevier
Environmental DNA (eDNA) metabarcoding is a novel method of assessing biodiversity
wherein samples are taken from the environment via water, sediment or air from which DNA …

RESCRIPt: Reproducible sequence taxonomy reference database management

MS Robeson, DR O'Rourke, BD Kaehler… - PLoS computational …, 2021 - journals.plos.org
Nucleotide sequence and taxonomy reference databases are critical resources for
widespread applications including marker-gene and metagenome sequencing for …

MitoZ: a toolkit for animal mitochondrial genome assembly, annotation and visualization

G Meng, Y Li, C Yang, S Liu - Nucleic acids research, 2019 - academic.oup.com
Mitochondrial genome (mitogenome) plays important roles in evolutionary and ecological
studies. It becomes routine to utilize multiple genes on mitogenome or the entire …

Counting with DNA in metabarcoding studies: How should we convert sequence reads to dietary data?

BE Deagle, AC Thomas, JC McInnes… - Molecular …, 2019 - Wiley Online Library
Advances in DNA sequencing technology have revolutionized the field of molecular analysis
of trophic interactions, and it is now possible to recover counts of food DNA sequences from …

Reintroducing bison results in long-running and resilient increases in grassland diversity

Z Ratajczak, SL Collins, JM Blair, SE Koerner… - Proceedings of the …, 2022 - pnas.org
The widespread extirpation of megafauna may have destabilized ecosystems and altered
biodiversity globally. Most megafauna extinctions occurred before the modern record …

Diversity and functional landscapes in the microbiota of animals in the wild

D Levin, N Raab, Y Pinto, D Rothschild, G Zanir… - Science, 2021 - science.org
Animals in the wild are able to subsist on pathogen-infected and poisonous food and show
immunity to various diseases. These may be due to their microbiota, yet we have a poor …

Non‐specific amplification compromises environmental DNA metabarcoding with COI

RA Collins, J Bakker, OS Wangensteen… - Methods in Ecology …, 2019 - Wiley Online Library
Metabarcoding extra‐organismal DNA from environmental samples is now a key technique
in aquatic biomonitoring and ecosystem health assessment. Of critical consideration when …

Diet tracing in ecology: Method comparison and selection

JM Nielsen, EL Clare, B Hayden… - Methods in Ecology …, 2018 - Wiley Online Library
Determining diet is a key prerequisite for understanding species interactions, food web
structure and ecological dynamics. In recent years, there has been considerable …

Seasonal dynamics of diet–gut microbiota interaction in adaptation of yaks to life at high altitude

N Guo, Q Wu, F Shi, J Niu, T Zhang… - npj Biofilms and …, 2021 - nature.com
Dietary selection and intake affect the survival and health of mammals under extreme
environmental conditions. It has been suggested that dietary composition is a key driver of …