hIPPYlib: An extensible software framework for large-scale inverse problems governed by PDEs: Part I: Deterministic inversion and linearized Bayesian inference

U Villa, N Petra, O Ghattas - ACM Transactions on Mathematical …, 2021 - dl.acm.org
We present an extensible software framework, hIPPYlib, for solution of large-scale
deterministic and Bayesian inverse problems governed by partial differential equations …

High-performance finite elements with MFEM

J Andrej, N Atallah, JP Bäcker… - … Journal of High …, 2024 - journals.sagepub.com
The MFEM (Modular Finite Element Methods) library is a high-performance C++ library for
finite element discretizations. MFEM supports numerous types of finite element methods and …

Multi-output multilevel best linear unbiased estimators via semidefinite programming

M Croci, KE Willcox, SJ Wright - Computer Methods in Applied Mechanics …, 2023 - Elsevier
Multifidelity forward uncertainty quantification (UQ) problems often involve multiple
quantities of interest and heterogeneous models (eg, different grids, equations, dimensions …

Spatial modeling algorithms for reactions and transport in biological cells

EA Francis, JG Laughlin, JS Dokken… - Nature Computational …, 2024 - nature.com
Biological cells rely on precise spatiotemporal coordination of biochemical reactions to
control their functions. Such cell signaling networks have been a common focus for …

Uncertainty quantification of parenchymal tracer distribution using random diffusion and convective velocity fields

M Croci, V Vinje, ME Rognes - Fluids and Barriers of the CNS, 2019 - Springer
Background Influx and clearance of substances in the brain parenchyma occur by a
combination of diffusion and convection, but the relative importance of these mechanisms is …

Finite elements for Matérn-type random fields: Uncertainty in computational mechanics and design optimization

T Duswald, B Keith, B Lazarov, S Petrides… - Computer Methods in …, 2024 - Elsevier
This work highlights an approach for incorporating realistic uncertainties into scientific
computing workflows based on finite elements, focusing on prevalent applications in …

Analysis of boundary effects on PDE-based sampling of Whittle--Matérn random fields

U Khristenko, L Scarabosio, P Swierczynski… - SIAM/ASA Journal on …, 2019 - SIAM
We consider the generation of samples of a mean-zero Gaussian random field with Matérn
covariance function. Every sample requires the solution of a differential equation with …

Optimal sensor and actuator placement for feedback control of vortex shedding

B **, SJ Illingworth, RD Sandberg - Journal of Fluid Mechanics, 2022 - cambridge.org
We consider linear feedback control of the two-dimensional flow past a cylinder at low
Reynolds numbers, with a particular focus on the optimal placement of a single sensor and a …

Multilevel approximation of Gaussian random fields: fast simulation

L Herrmann, K Kirchner, C Schwab - Mathematical Models and …, 2020 - World Scientific
We propose and analyze several multilevel algorithms for the fast simulation of possibly
nonstationary Gaussian random fields (GRFs) indexed, for example, by the closure of a …

A probabilistic finite element method based on random meshes: A posteriori error estimators and Bayesian inverse problems

A Abdulle, G Garegnani - Computer Methods in Applied Mechanics and …, 2021 - Elsevier
We present a novel probabilistic finite element method (FEM) for the solution and uncertainty
quantification of elliptic partial differential equations based on random meshes, which we …