Embracing the unknown: disentangling the complexities of the soil microbiome

N Fierer - Nature Reviews Microbiology, 2017 - nature.com
Soil microorganisms are clearly a key component of both natural and managed ecosystems.
Despite the challenges of surviving in soil, a gram of soil can contain thousands of individual …

Keystone taxa as drivers of microbiome structure and functioning

S Banerjee, K Schlaeppi… - Nature Reviews …, 2018 - nature.com
Microorganisms have a pivotal role in the functioning of ecosystems. Recent studies have
shown that microbial communities harbour keystone taxa, which drive community …

Stochastic community assembly: does it matter in microbial ecology?

J Zhou, D Ning - Microbiology and molecular biology reviews, 2017 - Am Soc Microbiol
Understanding the mechanisms controlling community diversity, functions, succession, and
biogeography is a central, but poorly understood, topic in ecology, particularly in microbial …

Fungal-bacterial diversity and microbiome complexity predict ecosystem functioning

C Wagg, K Schlaeppi, S Banerjee, EE Kuramae… - Nature …, 2019 - nature.com
The soil microbiome is highly diverse and comprises up to one quarter of Earth's diversity.
Yet, how such a diverse and functionally complex microbiome influences ecosystem …

Function and functional redundancy in microbial systems

S Louca, MF Polz, F Mazel, MBN Albright… - Nature ecology & …, 2018 - nature.com
Microbial communities often exhibit incredible taxonomic diversity, raising questions
regarding the mechanisms enabling species coexistence and the role of this diversity in …

Agricultural intensification reduces microbial network complexity and the abundance of keystone taxa in roots

S Banerjee, F Walder, L Büchi, M Meyer… - The ISME …, 2019 - academic.oup.com
Root-associated microbes play a key role in plant performance and productivity, making
them important players in agroecosystems. So far, very few studies have assessed the …

Regenerative agriculture—A literature review on the practices and mechanisms used to improve soil health

R Khangura, D Ferris, C Wagg, J Bowyer - Sustainability, 2023 - mdpi.com
Conventional farming practices can lead to soil degradation and a decline in productivity.
Regenerative agriculture (RA) is purported by advocates as a solution to these issues that …

Forest soil bacteria: diversity, involvement in ecosystem processes, and response to global change

S Lladó, R López-Mondéjar… - … and Molecular Biology …, 2017 - Am Soc Microbiol
The ecology of forest soils is an important field of research due to the role of forests as
carbon sinks. Consequently, a significant amount of information has been accumulated …

Consistent and correctable bias in metagenomic sequencing experiments

MR McLaren, AD Willis, BJ Callahan - Elife, 2019 - elifesciences.org
Marker-gene and metagenomic sequencing have profoundly expanded our ability to
measure biological communities. But the measurements they provide differ from the truth …

Diversity-triggered deterministic bacterial assembly constrains community functions

W Xun, W Li, W **ong, Y Ren, Y Liu, Y Miao… - Nature …, 2019 - nature.com
A growing body of evidence suggests that microbial α-diversity (local species richness) may
have positive effects on ecosystem function. However, less attention has been paid to β …