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[HTML][HTML] RNA structural dynamics as captured by molecular simulations: a comprehensive overview
J Šponer, G Bussi, M Krepl, P Banáš… - Chemical …, 2018 - pmc.ncbi.nlm.nih.gov
With both catalytic and genetic functions, ribonucleic acid (RNA) is perhaps the most
pluripotent chemical species in molecular biology, and its functions are intimately linked to …
pluripotent chemical species in molecular biology, and its functions are intimately linked to …
The role of protein loops and linkers in conformational dynamics and allostery
Proteins are dynamic entities that undergo a plethora of conformational changes that may
take place on a wide range of time scales. These changes can be as small as the rotation of …
take place on a wide range of time scales. These changes can be as small as the rotation of …
RNA structural dynamics as captured by molecular simulations: a comprehensive overview
With both catalytic and genetic functions, ribonucleic acid (RNA) is perhaps the most
pluripotent chemical species in molecular biology, and its functions are intimately linked to …
pluripotent chemical species in molecular biology, and its functions are intimately linked to …
Perspective: Coarse-grained models for biomolecular systems
WG Noid - The Journal of chemical physics, 2013 - pubs.aip.org
By focusing on essential features, while averaging over less important details, coarse-
grained (CG) models provide significant computational and conceptual advantages with …
grained (CG) models provide significant computational and conceptual advantages with …
[BOEK][B] Three-dimensional electron microscopy of macromolecular assemblies: visualization of biological molecules in their native state
J Frank - 2006 - books.google.com
Cryoelectron microscopy of biological molecules is among the hottest growth areas in
biophysics and structural biology at present, and Frank is arguably the most distinguished …
biophysics and structural biology at present, and Frank is arguably the most distinguished …
Normal mode analysis of biomolecular structures: functional mechanisms of membrane proteins
A polymer chain of N atoms enjoys 3N-6 internal degrees of freedom, which gives rise to
infinitely many conformations. Even a simple model of N) 100 atoms where bond lengths …
infinitely many conformations. Even a simple model of N) 100 atoms where bond lengths …
[BOEK][B] Coarse-graining of condensed phase and biomolecular systems
GA Voth - 2008 - taylorfrancis.com
Exploring recent developments in the field, Coarse-Graining of Condensed Phase and
Biomolecular Systems examines systematic ways of constructing coarse-grained …
Biomolecular Systems examines systematic ways of constructing coarse-grained …
Coarse-grained normal mode analysis in structural biology
The realization that experimentally observed functional motions of proteins can be predicted
by coarse-grained normal mode analysis has renewed interest in applications to structural …
by coarse-grained normal mode analysis has renewed interest in applications to structural …
[BOEK][B] Introduction to proteins: structure, function, and motion
Introduction to Proteins provides a comprehensive and state-of-the-art introduction to the
structure, function, and motion of proteins for students, faculty, and researchers at all levels …
structure, function, and motion of proteins for students, faculty, and researchers at all levels …
Usefulness and limitations of normal mode analysis in modeling dynamics of biomolecular complexes
J Ma - Structure, 2005 - cell.com
Various types of large-amplitude molecular deformation are ubiquitously involved in the
functions of biological macromolecules, especially supramolecular complexes. They can be …
functions of biological macromolecules, especially supramolecular complexes. They can be …