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Rapid, accurate, precise and reproducible ligand–protein binding free energy prediction
A central quantity of interest in molecular biology and medicine is the free energy of binding
of a molecule to a target biomacromolecule. Until recently, the accurate prediction of binding …
of a molecule to a target biomacromolecule. Until recently, the accurate prediction of binding …
[HTML][HTML] Artificial intelligence (AI) in rare diseases: is the future brighter?
S Brasil, C Pascoal, R Francisco, V dos Reis Ferreira… - Genes, 2019 - mdpi.com
The amount of data collected and managed in (bio) medicine is ever-increasing. Thus, there
is a need to rapidly and efficiently collect, analyze, and characterize all this information …
is a need to rapidly and efficiently collect, analyze, and characterize all this information …
AI-driven multiscale simulations illuminate mechanisms of SARS-CoV-2 spike dynamics
We develop a generalizable AI-driven workflow that leverages heterogeneous HPC
resources to explore the time-dependent dynamics of molecular systems. We use this …
resources to explore the time-dependent dynamics of molecular systems. We use this …
Supercomputer-based ensemble docking drug discovery pipeline with application to COVID-19
We present a supercomputer-driven pipeline for in silico drug discovery using enhanced
sampling molecular dynamics (MD) and ensemble docking. Ensemble docking makes use …
sampling molecular dynamics (MD) and ensemble docking. Ensemble docking makes use …
Deep learning for rare disease: A sco** review
Although individually rare, collectively more than 7,000 rare diseases affect about 10% of
patients. Each of the rare diseases impacts the quality of life for patients and their families …
patients. Each of the rare diseases impacts the quality of life for patients and their families …
Using GANs with adaptive training data to search for new molecules
The process of drug discovery involves a search over the space of all possible chemical
compounds. Generative Adversarial Networks (GANs) provide a valuable tool towards …
compounds. Generative Adversarial Networks (GANs) provide a valuable tool towards …
Targeting neuronal lysosomal dysfunction caused by β-glucocerebrosidase deficiency with an enzyme-based brain shuttle construct
A Gehrlein, V Udayar, N Anastasi, ML Morella… - Nature …, 2023 - nature.com
Mutations in glucocerebrosidase cause the lysosomal storage disorder Gaucher's disease
and are the most common risk factor for Parkinson's disease. Therapies to restore the …
and are the most common risk factor for Parkinson's disease. Therapies to restore the …
Dynamic Profiling of β-Coronavirus 3CL Mpro Protease Ligand-Binding Sites
E Cho, M Rosa, R Anjum, S Mehmood… - Journal of Chemical …, 2021 - ACS Publications
β-coronavirus (CoVs) alone has been responsible for three major global outbreaks in the
21st century. The current crisis has led to an urgent requirement to develop therapeutics …
21st century. The current crisis has led to an urgent requirement to develop therapeutics …
Structural insights into the lead identification of sub-type selective PDE4B inhibitors from plant bioactive molecule analogues
Abstract Phosphodiesterase-4B (PDE4B), a sub-type of PDE4, is highly expressed in the
brain and associated with schizophrenia, neuroinflammation, and cognition. A selective …
brain and associated with schizophrenia, neuroinflammation, and cognition. A selective …
Manifold learning in atomistic simulations: a conceptual review
Analyzing large volumes of high-dimensional data requires dimensionality reduction: finding
meaningful low-dimensional structures hidden in their high-dimensional observations. Such …
meaningful low-dimensional structures hidden in their high-dimensional observations. Such …