Metagenomic analyses: past and future trends

C Simon, R Daniel - Applied and environmental microbiology, 2011 - journals.asm.org
Metagenomics has revolutionized microbiology by paving the way for a cultivation-
independent assessment and exploitation of microbial communities present in complex …

Interactions in the microbiome: communities of organisms and communities of genes

E Boon, CJ Meehan, C Whidden… - FEMS microbiology …, 2014 - academic.oup.com
A central challenge in microbial community ecology is the delineation of appropriate units of
biodiversity, which can be taxonomic, phylogenetic, or functional in nature. The term …

Emerging technologies in bioremediation: constraints and opportunities

S Rayu, DG Karpouzas, BK Singh - Biodegradation, 2012 - Springer
Intensive industrialisation, inadequate disposal, large-scale manufacturing activities and
leaks of organic compounds have resulted in long-term persistent sources of contamination …

Metagenomics for the discovery of pollutant degrading enzymes

L Ufarté, É Laville, S Duquesne… - Biotechnology …, 2015 - Elsevier
Organic pollutants, including xenobiotics, are often persistent and toxic organic compounds
resulting from human activities and released in large amounts into terrestrial, fluvial and …

Emerging frontiers in microbe-mediated pesticide remediation: Unveiling role of omics and In silico approaches in engineered environment

MA Malla, A Dubey, A Raj, A Kumar, N Upadhyay… - Environmental …, 2022 - Elsevier
The overuse of pesticides for augmenting agriculture productivity always comes at the cost
of environment, biodiversity, and human health and has put the land, water, and …

Stable isotope probing and metagenomics highlight the effect of plants on uncultured phenanthrene-degrading bacterial consortium in polluted soil

F Thomas, E Corre, A Cébron - The ISME journal, 2019 - academic.oup.com
Polycyclic aromatic hydrocarbons (PAHs) are ubiquitous soil pollutants. The discovery that
plants can stimulate microbial degradation of PAHs has promoted research on …

When metagenomics meets stable-isotope probing: progress and perspectives

Y Chen, JC Murrell - Trends in Microbiology, 2010 - cell.com
The application of metagenomics, the culture-independent capture and subsequent analysis
of genomic DNA from the environment, has greatly expanded our knowledge of the diversity …

Phytoremediation: state-of-the-art and a key role for the plant microbiome in future trends and research prospects

S Thijs, W Sillen, N Weyens… - International journal of …, 2017 - Taylor & Francis
Phytoremediation is increasingly adopted as a more sustainable approach for soil
remediation. However, significant advances in efficiency are still necessary to attain higher …

Advances and perspective in bioremediation of polychlorinated biphenyl-contaminated soils

JK Sharma, RK Gautam, SV Nanekar, R Weber… - … Science and Pollution …, 2018 - Springer
In recent years, microbial degradation and bioremediation approaches of polychlorinated
biphenyls (PCBs) have been studied extensively considering their toxicity, carcinogenicity …

Interspecific interactions in mixed microbial cultures in a biodegradation perspective

H Mikesková, Č Novotný, K Svobodová - Applied microbiology and …, 2012 - Springer
In recent works, microbial consortia consisting of various bacteria and fungi exhibited a
biodegradation performance superior to single microbial strains. A highly efficient …