Genome-scale metabolic models (GEMs) computationally describe gene-protein-reaction
associations for entire metabolic genes in an organism, and can be simulated to predict …

Covering: up to 2021 Plants and their associated microbial communities are known to
produce millions of metabolites, a majority of which are still not characterized and are …

For over 10 years, ModelSEED has been a primary resource for the construction of draft
genome-scale metabolic models based on annotated microbial or plant genomes. Now …

Plant metabolism underpins many traits of ecological and agronomic importance. Plants
produce numerous compounds to cope with their environments but the biosynthetic …

Medicinal plants are a rich source of highly diverse specialized metabolites with important
pharmacological properties. Until recently, plant biologists were limited in their ability to …

The ability to build accurate protein families is a fundamental operation in bioinformatics that
influences comparative analyses, genome annotation, and metabolic modeling. For several …

Phytol from chlorophyll degradation can be phosphorylated to phytyl-phosphate and phytyl-
diphosphate, the substrate for tocopherol (vitamin E) synthesis. A candidate for the phytyl …

In recent years, the microbiome has attracted much attention because of the multiple roles
and functions that microbes play in plants, animals, and human beings. Seed-associated …

Data processing and interpretation represent the most challenging and time‐consuming
steps in high‐throughput metabolomic experiments, regardless of the analytical platforms …

Motivation Alternative polyadenylation (APA) has been increasingly recognized as a crucial
mechanism that contributes to transcriptome diversity and gene expression regulation. As …