Toward a foundation model of causal cell and tissue biology with a Perturbation Cell and Tissue Atlas
JE Rood, A Hupalowska, A Regev - Cell, 2024 - cell.com
Comprehensively charting the biologically causal circuits that govern the phenotypic space
of human cells has often been viewed as an insurmountable challenge. However, in the last …
of human cells has often been viewed as an insurmountable challenge. However, in the last …
Chromosome Duplication in Saccharomyces cerevisiae
SP Bell, K Labib - Genetics, 2016 - academic.oup.com
The accurate and complete replication of genomic DNA is essential for all life. In eukaryotic
cells, the assembly of the multi-enzyme replisomes that perform replication is divided into …
cells, the assembly of the multi-enzyme replisomes that perform replication is divided into …
Genetic compensation triggered by mutant mRNA degradation
Genetic robustness, or the ability of an organism to maintain fitness in the presence of
harmful mutations, can be achieved via protein feedback loops. Previous work has …
harmful mutations, can be achieved via protein feedback loops. Previous work has …
Map** the genetic landscape of human cells
Seminal yeast studies have established the value of comprehensively map** genetic
interactions (GIs) for inferring gene function. Efforts in human cells using focused gene sets …
interactions (GIs) for inferring gene function. Efforts in human cells using focused gene sets …
Combinatorial CRISPR–Cas9 screens for de novo map** of genetic interactions
We developed a systematic approach to map human genetic networks by combinatorial
CRISPR–Cas9 perturbations coupled to robust analysis of growth kinetics. We targeted all …
CRISPR–Cas9 perturbations coupled to robust analysis of growth kinetics. We targeted all …
Deconstruction of a neural circuit for hunger
Hunger is a complex behavioural state that elicits intense food seeking and consumption.
These behaviours are rapidly recapitulated by activation of starvation-sensitive AGRP …
These behaviours are rapidly recapitulated by activation of starvation-sensitive AGRP …
Complex synthetic lethality in cancer
The concept of synthetic lethality has been widely applied to identify therapeutic targets in
cancer, with varying degrees of success. The standard approach normally involves …
cancer, with varying degrees of success. The standard approach normally involves …
Synergistic drug combinations for cancer identified in a CRISPR screen for pairwise genetic interactions
Identification of effective combination therapies is critical to address the emergence of drug-
resistant cancers, but direct screening of all possible drug combinations is infeasible. Here …
resistant cancers, but direct screening of all possible drug combinations is infeasible. Here …
Integrative approaches for finding modular structure in biological networks
A central goal of systems biology is to elucidate the structural and functional architecture of
the cell. To this end, large and complex networks of molecular interactions are being rapidly …
the cell. To this end, large and complex networks of molecular interactions are being rapidly …
Global genetic networks and the genotype-to-phenotype relationship
Genetic interactions identify combinations of genetic variants that im**e on phenotype.
With whole-genome sequence information available for thousands of individuals within a …
With whole-genome sequence information available for thousands of individuals within a …