[HTML][HTML] Viral quasispecies

R Andino, E Domingo - Virology, 2015 - Elsevier
New generation sequencing is greatly expanding the capacity to examine the composition of
mutant spectra of viral quasispecies in infected cells and host organisms. Here we review …

[HTML][HTML] Current perspectives on HIV-1 antiretroviral drug resistance

P Iyidogan, KS Anderson - Viruses, 2014 - mdpi.com
Current advancements in antiretroviral therapy (ART) have turned HIV-1 infection into a
chronic and manageable disease. However, treatment is only effective until HIV-1 develops …

Collective infectious units in viruses

R Sanjuán - Trends in microbiology, 2017 - cell.com
Increasing evidence indicates that viruses do not simply propagate as independent virions
among cells, organs, and hosts. Instead, viral spread is often mediated by structures that …

Quasispecies nature of RNA viruses: lessons from the past

K Singh, D Mehta, S Dumka, AS Chauhan, S Kumar - Vaccines, 2023 - mdpi.com
Viral quasispecies are distinct but closely related mutants formed by the disparity in viral
genomes due to recombination, mutations, competition, and selection pressure. Theoretical …

Adapting the rhizome concept to an extended definition of viral quasispecies and the implications for molecular evolution

CR Landa, A Ariza-Mateos, C Briones, C Perales… - Scientific Reports, 2024 - nature.com
The rhizome concept proposed by Gilles Deleuze and Félix Guattari offers a novel
perspective on the organization and interdependence of complex constellations of …

Extinction of West Nile virus by favipiravir through lethal mutagenesis

E Escribano-Romero, N Jiménez de Oya… - Antimicrobial agents …, 2017 - journals.asm.org
Favipiravir is an antiviral agent effective against several RNA viruses. The drug has been
shown to protect mice against experimental infection with a lethal dose of West Nile virus …

Attenuation of human enterovirus 71 high-replication-fidelity variants in AG129 mice

T Meng, J Kwang - Journal of virology, 2014 - journals.asm.org
In a screen for ribavirin resistance, a novel high-fidelity variant of human enterovirus 71
(EV71) with the single amino acid change L123F in its RNA-dependent RNA polymerase …

Inference with viral quasispecies diversity indices: clonal and NGS approaches

J Gregori, M Salicru, E Domingo, A Sanchez… - …, 2014 - academic.oup.com
Given the inherent dynamics of a viral quasispecies, we are often interested in the
comparison of diversity indices of sequential samples of a patient, or in the comparison of …

Response of hepatitis C virus to long-term passage in the presence of alpha interferon: multiple mutations and a common phenotype

C Perales, NM Beach, I Gallego, ME Soria… - Journal of …, 2013 - journals.asm.org
Cell culture-produced hepatitis C virus (HCV) has been subjected to up to 100 serial
passages in human hepatoma cells in the absence or presence of different doses of alpha …

Extinction of hepatitis C virus by ribavirin in hepatoma cells involves lethal mutagenesis

AM Ortega-Prieto, J Sheldon, A Grande-Pérez… - PloS one, 2013 - journals.plos.org
Lethal mutagenesis, or virus extinction produced by enhanced mutation rates, is under
investigation as an antiviral strategy that aims at counteracting the adaptive capacity of viral …