Electrostatic interactions in protein structure, folding, binding, and condensation

HX Zhou, X Pang - Chemical reviews, 2018 - ACS Publications
Charged and polar groups, through forming ion pairs, hydrogen bonds, and other less
specific electrostatic interactions, impart important properties to proteins. Modulation of the …

Protein analysis by shotgun/bottom-up proteomics

Y Zhang, BR Fonslow, B Shan, MC Baek… - Chemical …, 2013 - ACS Publications
According to Genome Sequencing Project statistics (http://www. ncbi. nlm. nih.
gov/genomes/static/gpstat. html), as of February 16, 2012, complete gene sequences have …

[HTML][HTML] Macromolecular condensation buffers intracellular water potential

JL Watson, E Seinkmane, CT Styles, A Mihut… - Nature, 2023 - nature.com
Optimum protein function and biochemical activity critically depends on water availability
because solvent thermodynamics drive protein folding and macromolecular interactions …

Structure of activated transcription complex Pol II–DSIF–PAF–SPT6

SM Vos, L Farnung, M Boehning, C Wigge, A Linden… - Nature, 2018 - nature.com
Gene regulation involves activation of RNA polymerase II (Pol II) that is paused and bound
by the protein complexes DRB sensitivity-inducing factor (DSIF) and negative elongation …

15 years of PhosphoSitePlus®: integrating post-translationally modified sites, disease variants and isoforms

PV Hornbeck, JM Kornhauser, V Latham… - Nucleic acids …, 2019 - academic.oup.com
For 15 years the mission of PhosphoSitePlus®(PSP, https://www. phosphosite. org) has
been to provide comprehensive information and tools for the study of mammalian post …

TFEB links autophagy to lysosomal biogenesis

C Settembre, C Di Malta, VA Polito, MG Arencibia… - science, 2011 - science.org
Autophagy is a cellular catabolic process that relies on the cooperation of autophagosomes
and lysosomes. During starvation, the cell expands both compartments to enhance …

Proteome-wide post-translational modification statistics: frequency analysis and curation of the swiss-prot database

GA Khoury, RC Baliban, CA Floudas - Scientific reports, 2011 - nature.com
Post-translational modifications (PTMs) broadly contribute to the recent explosion of
proteomic data and possess a complexity surpassing that of protein design. PTMs are the …

A mass spectrometric-derived cell surface protein atlas

D Bausch-Fluck, A Hofmann, T Bock, AP Frei… - PloS one, 2015 - journals.plos.org
Cell surface proteins are major targets of biomedical research due to their utility as cellular
markers and their extracellular accessibility for pharmacological intervention. However …

Status of large-scale analysis of post-translational modifications by mass spectrometry

JV Olsen, M Mann - Molecular & cellular proteomics, 2013 - ASBMB
Cellular function can be controlled through the gene expression program, but often protein
post-translational modifications (PTMs) provide a more precise and elegant mechanism. Key …

Lysine acetylation targets protein complexes and co-regulates major cellular functions

C Choudhary, C Kumar, F Gnad, ML Nielsen… - Science, 2009 - science.org
Lysine acetylation is a reversible posttranslational modification of proteins and plays a key
role in regulating gene expression. Technological limitations have so far prevented a global …