Universal QM/MM approaches for general nanoscale applications

KS Csizi, M Reiher - Wiley Interdisciplinary Reviews …, 2023 - Wiley Online Library
Quantum mechanics/molecular mechanics (QM/MM) hybrid models allow one to address
chemical phenomena in complex molecular environments. Whereas this modeling approach …

QM/AMOEBA description of properties and dynamics of embedded molecules

M Nottoli, M Bondanza, P Mazzeo… - Wiley …, 2023 - Wiley Online Library
We describe the development, implementation, and application of a polarizable QM/MM
strategy, based on the AMOEBA polarizable force field, for calculating molecular properties …

Polarizable embedding QM/MM: the future gold standard for complex (bio) systems?

M Bondanza, M Nottoli, L Cupellini… - Physical Chemistry …, 2020 - pubs.rsc.org
Nowadays, hybrid QM/MM approaches are widely used to study (supra) molecular systems
embedded in complex biological matrices. However, in their common formulation, mutual …

Ultrafast spectroscopy of photoactive molecular systems from first principles: Where we stand today and where we are going

I Conti, G Cerullo, A Nenov… - Journal of the American …, 2020 - ACS Publications
Computational spectroscopy is becoming a mandatory tool for the interpretation of the
complex, and often congested, spectral maps delivered by modern non-linear multi-pulse …

Hybrid QM/classical models: Methodological advances and new applications

F Lipparini, B Mennucci - Chemical Physics Reviews, 2021 - pubs.aip.org
Hybrid methods that combine quantum mechanical descriptions with classical models are
very popular in molecular modeling. Such a large diffusion reflects their effectiveness, which …

Multiscale models for light-driven processes

M Nottoli, L Cupellini, F Lipparini… - Annual Review of …, 2021 - annualreviews.org
Multiscale models combining quantum mechanical and classical descriptions are a very
popular strategy to simulate properties and processes of complex systems. Many alternative …

A many-body, fully polarizable approach to QM/MM simulations

E Lambros, F Lipparini, GA Cisneros… - Journal of chemical …, 2020 - ACS Publications
We present a new development in quantum mechanics/molecular mechanics (QM/MM)
methods by replacing conventional MM models with data-driven many-body (MB) …

Exploring high‐dimensional free energy landscapes of chemical reactions

S Awasthi, NN Nair - Wiley Interdisciplinary Reviews …, 2019 - Wiley Online Library
Molecular dynamics (MD) techniques are widely used in computing free energy changes for
conformational transitions and chemical reactions, mainly in condensed matter systems …

Phase space and collective variable based simulation methods for studies of rare events

S Paul, NN Nair, H Vashisth - Molecular Simulation, 2019 - Taylor & Francis
In this work, we review molecular simulation methods for studies of rare events. Specifically
highlighted are recent advances and biological applications of methods that utilise unbiased …

Proton-exchange reaction in acidic zeolites: Mechanism and free energetics

R Verma, NN Nair - The Journal of Physical Chemistry C, 2022 - ACS Publications
Conversion of alkanes to liquid fuels and other chemicals has a great demand in many
industrial applications. The key challenge in the alkane conversion is the activation of the C …