A metabolic modeling platform for the computation of microbial ecosystems in time and space (COMETS)

I Dukovski, D Bajić, JM Chacón, M Quintin, JCC Vila… - Nature protocols, 2021 - nature.com
Genome-scale stoichiometric modeling of metabolism has become a standard systems
biology tool for modeling cellular physiology and growth. Extensions of this approach are …

Theory and experiments for disordered elastic manifolds, depinning, avalanches, and sandpiles

KJ Wiese - Reports on Progress in Physics, 2022 - iopscience.iop.org
Abstract Domain walls in magnets, vortex lattices in superconductors, contact lines at
depinning, and many other systems can be modeled as an elastic system subject to …

[書籍][B] Non-equilibrium phase transitions

M Henkel - 2008 - Springer
“The career structure and funding of the universities [...] currently strongly discourages
academics and faculties from putting any investment into teaching–there are no career or …

Landau–Ginzburg theory of cortex dynamics: Scale-free avalanches emerge at the edge of synchronization

S Di Santo, P Villegas, R Burioni… - Proceedings of the …, 2018 - National Acad Sciences
Understanding the origin, nature, and functional significance of complex patterns of neural
activity, as recorded by diverse electrophysiological and neuroimaging techniques, is a …

Properties of equilibria and glassy phases of the random lotka-volterra model with demographic noise

A Altieri, F Roy, C Cammarota, G Biroli - Physical Review Letters, 2021 - APS
We study a reference model in theoretical ecology, the disordered Lotka-Volterra model for
ecological communities, in the presence of finite demographic noise. Our theoretical …

Arrested phase separation in reproducing bacteria creates a generic route to pattern formation

ME Cates, D Marenduzzo… - Proceedings of the …, 2010 - National Acad Sciences
We present a generic mechanism by which reproducing microorganisms, with a diffusivity
that depends on the local population density, can form stable patterns. For instance, it is …

A comparison of biased simulation schemes for stochastic volatility models

R Lord, R Koekkoek, DV Dijk - Quantitative Finance, 2010 - Taylor & Francis
Using an Euler discretization to simulate a mean-reverting CEV process gives rise to the
problem that while the process itself is guaranteed to be nonnegative, the discretization is …

[書籍][B] Stochastic numerical methods: an introduction for students and scientists

R Toral, P Colet - 2014 - books.google.com
Stochastic Numerical Methods introduces at Master level the numerical methods that use
probability or stochastic concepts to analyze random processes. The book aims at being …

Signatures of self-organized criticality in an ultracold atomic gas

S Helmrich, A Arias, G Lochead, TM Wintermantel… - Nature, 2020 - nature.com
Self-organized criticality is an elegant explanation of how complex structures emerge and
persist throughout nature, and why such structures often exhibit similar scale-invariant …

Eluding catastrophic shifts

P Villa Martín, JA Bonachela… - Proceedings of the …, 2015 - National Acad Sciences
Transitions between regimes with radically different properties are ubiquitous in nature.
Such transitions can occur either smoothly or in an abrupt and catastrophic fashion …