Volume electron microscopy

CJ Peddie, C Genoud, A Kreshuk, K Meechan… - Nature Reviews …, 2022 - nature.com
Life exists in three dimensions, but until the turn of the century most electron microscopy
methods provided only 2D image data. Recently, electron microscopy techniques capable of …

The neuronal organization of the retina

RH Masland - Neuron, 2012 - cell.com
The mammalian retina consists of neurons of> 60 distinct types, each playing a specific role
in processing visual images. They are arranged in three main stages. The first decomposes …

TrakEM2 software for neural circuit reconstruction

A Cardona, S Saalfeld, J Schindelin… - PloS one, 2012 - journals.plos.org
A key challenge in neuroscience is the expeditious reconstruction of neuronal circuits. For
model systems such as Drosophila and C. elegans, the limiting step is no longer the …

Fiji: an open-source platform for biological-image analysis

J Schindelin, I Arganda-Carreras, E Frise, V Kaynig… - Nature …, 2012 - nature.com
Fiji is a distribution of the popular open-source software ImageJ focused on biological-image
analysis. Fiji uses modern software engineering practices to combine powerful software …

[HTML][HTML] Retinal remodeling in human retinitis pigmentosa

BW Jones, RL Pfeiffer, WD Ferrell, CB Watt… - Experimental eye …, 2016 - Elsevier
Retinitis Pigmentosa (RP) in the human is a progressive, currently irreversible neural
degenerative disease usually caused by gene defects that disrupt the function or …

Network anatomy and in vivo physiology of visual cortical neurons

DD Bock, WCA Lee, AM Kerlin, ML Andermann… - Nature, 2011 - nature.com
In the cerebral cortex, local circuits consist of tens of thousands of neurons, each of which
makes thousands of synaptic connections. Perhaps the biggest impediment to …

[HTML][HTML] Exploring the third dimension: volume electron microscopy comes of age

CJ Peddie, LM Collinson - Micron, 2014 - Elsevier
Groundbreaking advances in volume electron microscopy and specimen preparation are
enabling the 3-dimensional visualisation of specimens with unprecedented detail, and …

An Integrated Micro- and Macroarchitectural Analysis of the Drosophila Brain by Computer-Assisted Serial Section Electron Microscopy

A Cardona, S Saalfeld, S Preibisch, B Schmid… - PLoS …, 2010 - journals.plos.org
The analysis of microcircuitry (the connectivity at the level of individual neuronal processes
and synapses), which is indispensable for our understanding of brain function, is based on …

Elastic volume reconstruction from series of ultra-thin microscopy sections

S Saalfeld, R Fetter, A Cardona, P Tomancak - Nature methods, 2012 - nature.com
Anatomy of large biological specimens is often reconstructed from serially sectioned
volumes imaged by high-resolution microscopy. We developed a method to reassemble a …

[HTML][HTML] Single-synapse analysis of a diverse synapse population: proteomic imaging methods and markers

KD Micheva, B Busse, NC Weiler, N O'Rourke… - Neuron, 2010 - cell.com
A lack of methods for measuring the protein compositions of individual synapses in situ has
so far hindered the exploration and exploitation of synapse molecular diversity. Here, we …