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Approximation and inference methods for stochastic biochemical kinetics—a tutorial review
Stochastic fluctuations of molecule numbers are ubiquitous in biological systems. Important
examples include gene expression and enzymatic processes in living cells. Such systems …
examples include gene expression and enzymatic processes in living cells. Such systems …
Dynamical systems on hypergraphs
Networks are a widely used and efficient paradigm to model real-world systems where basic
units interact pairwise. Many body interactions are often at play, and cannot be modelled by …
units interact pairwise. Many body interactions are often at play, and cannot be modelled by …
The theory of pattern formation on directed networks
Dynamical processes on networks have generated widespread interest in recent years. The
theory of pattern formation in reaction–diffusion systems defined on symmetric networks has …
theory of pattern formation in reaction–diffusion systems defined on symmetric networks has …
Turing patterns on discrete topologies: from networks to higher-order structures
Nature is a blossoming of regular structures, signature of self-organization of the underlying
microscopic interacting agents. Turing theory of pattern formation is one of the most studied …
microscopic interacting agents. Turing theory of pattern formation is one of the most studied …
Persistence of chimera states and the challenge for synchronization in real-world networks
The emergence of order in nature manifests in different phenomena, with synchronization
being one of the most representative examples. Understanding the role played by the …
being one of the most representative examples. Understanding the role played by the …
Robust stochastic Turing patterns in the development of a one-dimensional cyanobacterial organism
Under nitrogen deprivation, the one-dimensional cyanobacterial organism Anabaena sp.
PCC 7120 develops patterns of single, nitrogen-fixing cells separated by nearly regular …
PCC 7120 develops patterns of single, nitrogen-fixing cells separated by nearly regular …
Tune the topology to create or destroy patterns
We consider the dynamics of a reaction-diffusion system on a multigraph. The species share
the same set of nodes but can access different links to explore the embedding spatial …
the same set of nodes but can access different links to explore the embedding spatial …
Turing instability in quantum activator–inhibitor systems
Turing instability is a fundamental mechanism of nonequilibrium self-organization. However,
despite the universality of its essential mechanism, Turing instability has thus far been …
despite the universality of its essential mechanism, Turing instability has thus far been …
Effects of noise on the critical points of Turing instability in complex ecosystems
Noise is ubiquitous in natural and artificial systems. In a noisy environment, the interactions
among nodes may fluctuate randomly, leading to more complicated interactions. In this …
among nodes may fluctuate randomly, leading to more complicated interactions. In this …
Nonlinear walkers and efficient exploration of congested networks
Random walks are the simplest way to explore or search a graph and have revealed a very
useful tool to investigate and characterize the structural properties of complex networks from …
useful tool to investigate and characterize the structural properties of complex networks from …