Correlation and association analyses in microbiome study integrating multiomics in health and disease

Y **a - Progress in molecular biology and translational …, 2020 - Elsevier
Correlation and association analyses are one of the most widely used statistical methods in
research fields, including microbiome and integrative multiomics studies. Correlation and …

A review of integrative imputation for multi-omics datasets

M Song, J Greenbaum, J Luttrell IV, W Zhou… - Frontiers in …, 2020 - frontiersin.org
Multi-omics studies, which explore the interactions between multiple types of biological
factors, have significant advantages over single-omics analysis for their ability to provide a …

Dynamic incorporation of multiple in silico functional annotations empowers rare variant association analysis of large whole-genome sequencing studies at scale

X Li, Z Li, H Zhou, SM Gaynor, Y Liu, H Chen, R Sun… - Nature …, 2020 - nature.com
Large-scale whole-genome sequencing studies have enabled the analysis of rare variants
(RVs) associated with complex phenotypes. Commonly used RV association tests have …

[HTML][HTML] Identification of ALK in Thinness

M Orthofer, A Valsesia, R Mägi, QP Wang… - Cell, 2020 - cell.com
There is considerable inter-individual variability in susceptibility to weight gain despite an
equally obesogenic environment in large parts of the world. Whereas many studies have …

Efficient variant set mixed model association tests for continuous and binary traits in large-scale whole-genome sequencing studies

H Chen, JE Huffman, JA Brody, C Wang, S Lee… - The American Journal of …, 2019 - cell.com
With advances in whole-genome sequencing (WGS) technology, more advanced statistical
methods for testing genetic association with rare variants are being developed. Methods in …

RAVAR: a curated repository for rare variant–trait associations

C Cao, M Shao, C Zuo, D Kwok, L Liu… - Nucleic Acids …, 2024 - academic.oup.com
Rare variants contribute significantly to the genetic causes of complex traits, as they can
have much larger effects than common variants and account for much of the missing …

An adaptive two-sample test for high-dimensional means

G Xu, L Lin, P Wei, W Pan - Biometrika, 2016 - academic.oup.com
Several two-sample tests for high-dimensional data have been proposed recently, but they
are powerful only against certain alternative hypotheses. In practice, since the true …

An adaptive association test for microbiome data

C Wu, J Chen, J Kim, W Pan - Genome medicine, 2016 - Springer
There is increasing interest in investigating how the compositions of microbial communities
are associated with human health and disease. Although existing methods have identified …

[HTML][HTML] Pathway analysis of complex diseases for GWAS, extending to consider rare variants, multi-omics and interactions

PYP Kao, KH Leung, LWC Chan, SP Yip… - Biochimica et Biophysica …, 2017 - Elsevier
Background Genome-wide association studies (GWAS) is a major method for studying the
genetics of complex diseases. Finding all sequence variants to explain fully the aetiology of …

Asymptotically independent U-statistics in high-dimensional testing

Y He, G Xu, C Wu, W Pan - Annals of statistics, 2021 - pmc.ncbi.nlm.nih.gov
Many high-dimensional hypothesis tests aim to globally examine marginal or low-
dimensional features of a high-dimensional joint distribution, such as testing of mean …