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AlphaFold predictions are valuable hypotheses and accelerate but do not replace experimental structure determination
Artificial intelligence-based protein structure prediction methods such as AlphaFold have
revolutionized structural biology. The accuracies of these predictions vary, however, and …
revolutionized structural biology. The accuracies of these predictions vary, however, and …
Identifying and addressing methodological incongruence in phylogenomics: A review
JF Fleming, A Valero‐Gracia… - Evolutionary …, 2023 - Wiley Online Library
The availability of phylogenetic data has greatly expanded in recent years. As a result, a
new era in phylogenetic analysis is dawning—one in which the methods we use to analyse …
new era in phylogenetic analysis is dawning—one in which the methods we use to analyse …
Ctenophore relationships and their placement as the sister group to all other animals
Ctenophora, comprising approximately 200 described species, is an important lineage for
understanding metazoan evolution and is of great ecological and economic importance …
understanding metazoan evolution and is of great ecological and economic importance …
Error, signal, and the placement of Ctenophora sister to all other animals
Elucidating relationships among early animal lineages has been difficult, and recent
phylogenomic analyses place Ctenophora sister to all other extant animals, contrary to the …
phylogenomic analyses place Ctenophora sister to all other extant animals, contrary to the …
Phylogenomics of Lophotrochozoa with consideration of systematic error
Phylogenomic studies have improved understanding of deep metazoan phylogeny and
show promise for resolving incongruences among analyses based on limited numbers of …
show promise for resolving incongruences among analyses based on limited numbers of …
Illuminating the base of the annelid tree using transcriptomics
Annelida is one of three animal groups possessing segmentation and is central in
considerations about the evolution of different character traits. It has even been proposed …
considerations about the evolution of different character traits. It has even been proposed …
A critical appraisal of the placement of **phosura (Chelicerata) with account of known sources of phylogenetic error
JA Ballesteros, PP Sharma - Systematic Biology, 2019 - academic.oup.com
Horseshoe crabs (**phosura) are traditionally regarded as sister group to the clade of
terrestrial chelicerates (Arachnida). This hypothesis has been challenged by recent …
terrestrial chelicerates (Arachnida). This hypothesis has been challenged by recent …
On 20 years of Lophotrochozoa
KM Kocot - Organisms Diversity & Evolution, 2016 - Springer
Lophotrochozoa is a protostome clade that includes disparate animals such as molluscs,
annelids, bryozoans, and flatworms, giving it the distinction of including the most body plans …
annelids, bryozoans, and flatworms, giving it the distinction of including the most body plans …
Phylogenomic subsampling and the search for phylogenetically reliable loci
N Mongiardino Koch - Molecular Biology and Evolution, 2021 - academic.oup.com
Phylogenomic subsampling is a procedure by which small sets of loci are selected from
large genome-scale data sets and used for phylogenetic inference. This step is often …
large genome-scale data sets and used for phylogenetic inference. This step is often …
An integrative phylogenomic approach to elucidate the evolutionary history and divergence times of Neuropterida (Insecta: Holometabola)
A Vasilikopoulos, B Misof, K Meusemann… - BMC Evolutionary …, 2020 - Springer
Background The latest advancements in DNA sequencing technologies have facilitated the
resolution of the phylogeny of insects, yet parts of the tree of Holometabola remain …
resolution of the phylogeny of insects, yet parts of the tree of Holometabola remain …