Microbial diversity in extreme environments
WS Shu, LN Huang - Nature Reviews Microbiology, 2022 - nature.com
A wide array of microorganisms, including many novel, phylogenetically deeply rooted taxa,
survive and thrive in extreme environments. These unique and reduced-complexity …
survive and thrive in extreme environments. These unique and reduced-complexity …
Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
We present two standards developed by the Genomic Standards Consortium (GSC) for
reporting bacterial and archaeal genome sequences. Both are extensions of the Minimum …
reporting bacterial and archaeal genome sequences. Both are extensions of the Minimum …
metaFlye: scalable long-read metagenome assembly using repeat graphs
Long-read sequencing technologies have substantially improved the assemblies of many
isolate bacterial genomes as compared to fragmented short-read assemblies. However …
isolate bacterial genomes as compared to fragmented short-read assemblies. However …
Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life
Challenges in cultivating microorganisms have limited the phylogenetic diversity of currently
available microbial genomes. This is being addressed by advances in sequencing …
available microbial genomes. This is being addressed by advances in sequencing …
Advances in metagenomics and its application in environmental microorganisms
L Zhang, FX Chen, Z Zeng, M Xu, F Sun… - Frontiers in …, 2021 - frontiersin.org
Metagenomics is a new approach to study microorganisms obtained from a specific
environment by functional gene screening or sequencing analysis. Metagenomics studies …
environment by functional gene screening or sequencing analysis. Metagenomics studies …
A centimeter-long bacterium with DNA contained in metabolically active, membrane-bound organelles
Cells of most bacterial species are around 2 micrometers in length, with some of the largest
specimens reaching 750 micrometers. Using fluorescence, x-ray, and electron microscopy in …
specimens reaching 750 micrometers. Using fluorescence, x-ray, and electron microscopy in …
Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection
Productivity of ruminant livestock depends on the rumen microbiota, which ferment
indigestible plant polysaccharides into nutrients used for growth. Understanding the …
indigestible plant polysaccharides into nutrients used for growth. Understanding the …
Viruses interact with hosts that span distantly related microbial domains in dense hydrothermal mats
Many microbes in nature reside in dense, metabolically interdependent communities. We
investigated the nature and extent of microbe-virus interactions in relation to microbial …
investigated the nature and extent of microbe-virus interactions in relation to microbial …
IMG/M: integrated genome and metagenome comparative data analysis system
IMA Chen, VM Markowitz, K Chu… - Nucleic acids …, 2016 - academic.oup.com
Abstract The Integrated Microbial Genomes with Microbiome Samples (IMG/M: https://img.
jgi. doe. gov/m/) system contains annotated DNA and RNA sequence data of (i) archaeal …
jgi. doe. gov/m/) system contains annotated DNA and RNA sequence data of (i) archaeal …
HydDB: a web tool for hydrogenase classification and analysis
H2 metabolism is proposed to be the most ancient and diverse mechanism of energy-
conservation. The metalloenzymes mediating this metabolism, hydrogenases, are encoded …
conservation. The metalloenzymes mediating this metabolism, hydrogenases, are encoded …