Museum genomics

DC Card, B Shapiro, G Giribet, C Moritz… - Annual Review of …, 2021 - annualreviews.org
Natural history collections are invaluable repositories of biological information that provide
an unrivaled record of Earth's biodiversity. Museum genomics—genomics research using …

The evolutionary history of wild and domestic brown rats (Rattus norvegicus)

J Munshi-South, JA Garcia, D Orton, M Phifer-Rixey - Science, 2024 - science.org
The brown rat (Rattus norvegicus) occupies nearly every terrestrial habitat with a human
presence and is one of our most important model organisms. Despite this prevalence, gaps …

Host genetic determinants of the gut microbiota of wild mice

TA Suzuki, M Phifer‐Rixey, KL Mack… - Molecular …, 2019 - Wiley Online Library
Identifying a common set of genes that mediate host–microbial interactions across
populations and species of mammals has broad relevance for human health and animal …

Temporal genomic contrasts reveal rapid evolutionary responses in an alpine mammal during recent climate change

KE Bi, T Linderoth, S Singhal, D Vanderpool… - PLoS …, 2019 - journals.plos.org
Many species have experienced dramatic changes in their abundance and distribution
during recent climate change, but it is often unclear whether such ecological responses are …

Model‐based genotype and ancestry estimation for potential hybrids with mixed‐ploidy

V Shastry, PE Adams, D Lindtke… - Molecular ecology …, 2021 - Wiley Online Library
Non‐random mating among individuals can lead to spatial clustering of genetically similar
individuals and population stratification. This deviation from panmixia is commonly observed …

Tissue-specific and cis-regulatory changes underlie parallel, adaptive gene expression evolution in house mice

SM Durkin, MA Ballinger, MW Nachman - Plos Genetics, 2024 - journals.plos.org
Changes in gene regulation have long been appreciated as a driving force of adaptive
evolution, however the relative contributions of cis-and trans-acting changes to gene …

Female behavior drives the formation of distinct social structures in C57BL/6J versus wild-derived outbred mice in field enclosures

CC Vogt, MN Zipple, DD Sprockett, CH Miller… - BMC biology, 2024 - Springer
Background Social behavior and social organization have major influences on individual
health and fitness. Yet, biomedical research focuses on studying a few genotypes under …

Behavioral and Genomic Sensory Adaptations Underlying the Pest Activity of Drosophila suzukii

SM Durkin, M Chakraborty, A Abrieux… - Molecular biology …, 2021 - academic.oup.com
Studying how novel phenotypes originate and evolve is fundamental to the field of
evolutionary biology as it allows us to understand how organismal diversity is generated and …

The genomics of rapid climatic adaptation and parallel evolution in North American house mice

KG Ferris, AS Chavez, TA Suzuki, EJ Beckman… - PLoS …, 2021 - journals.plos.org
Parallel changes in genotype and phenotype in response to similar selection pressures in
different populations provide compelling evidence of adaptation. House mice (Mus …

Gene regulation underlies environmental adaptation in house mice

KL Mack, MA Ballinger, M Phifer-Rixey… - Genome …, 2018 - genome.cshlp.org
Changes in cis-regulatory regions are thought to play a major role in the genetic basis of
adaptation. However, few studies have linked cis-regulatory variation with adaptation in …