Synthetic biology tools to engineer microbial communities for biotechnology
Microbial consortia have been used in biotechnology processes, including fermentation,
waste treatment, and agriculture, for millennia. Today, synthetic biologists are increasingly …
waste treatment, and agriculture, for millennia. Today, synthetic biologists are increasingly …
Constraining the metabolic genotype–phenotype relationship using a phylogeny of in silico methods
Reconstructed microbial metabolic networks facilitate a mechanistic description of the
genotype–phenotype relationship through the deployment of constraint-based …
genotype–phenotype relationship through the deployment of constraint-based …
OptCom: a multi-level optimization framework for the metabolic modeling and analysis of microbial communities
Microorganisms rarely live isolated in their natural environments but rather function in
consolidated and socializing communities. Despite the growing availability of high …
consolidated and socializing communities. Despite the growing availability of high …
Engineering microbial consortia for controllable outputs
Much research has been invested into engineering microorganisms to perform desired
biotransformations; nonetheless, these efforts frequently fall short of expected results due to …
biotransformations; nonetheless, these efforts frequently fall short of expected results due to …
Environments that induce synthetic microbial ecosystems
Interactions between microbial species are sometimes mediated by the exchange of small
molecules, secreted by one species and metabolized by another. Both one-way …
molecules, secreted by one species and metabolized by another. Both one-way …
Synthetic ecology of microbes: mathematical models and applications
As the indispensable role of natural microbial communities in many aspects of life on Earth
is uncovered, the bottom-up engineering of synthetic microbial consortia with novel functions …
is uncovered, the bottom-up engineering of synthetic microbial consortia with novel functions …
Trait-based modelling in ecology: a review of two decades of research
Trait-based approaches are an alternative to species-based approaches for functionally
linking individual organisms with community structure and dynamics. In the trait-based …
linking individual organisms with community structure and dynamics. In the trait-based …
Challenges and perspectives of polyhydroxyalkanoate production from microalgae/cyanobacteria and bacteria as microbial factories: an assessment of hybrid …
Polyhydroxyalkanoates (PHAs) are the biopolymer of choice if we look for a substitute of
petroleum-based non-biodegradable plastics. Microbial production of PHAs as carbon …
petroleum-based non-biodegradable plastics. Microbial production of PHAs as carbon …
Towards synthetic microbial consortia for bioprocessing
J Shong, MRJ Diaz, CH Collins - Current Opinion in Biotechnology, 2012 - Elsevier
The use of microbial consortia for bioprocessing has been limited by our ability to reliably
control community composition and function simultaneously. Recent advances in synthetic …
control community composition and function simultaneously. Recent advances in synthetic …
Machine learning for the advancement of genome-scale metabolic modeling
Constraint-based modeling (CBM) has evolved as the core systems biology tool to map the
interrelations between genotype, phenotype, and external environment. The recent …
interrelations between genotype, phenotype, and external environment. The recent …