Examining horizontal gene transfer in microbial communities

IL Brito - Nature Reviews Microbiology, 2021 - nature.com
Bacteria acquire novel DNA through horizontal gene transfer (HGT), a process that enables
an organism to rapidly adapt to changing environmental conditions, provides a competitive …

Evolutionary classification of CRISPR–Cas systems: a burst of class 2 and derived variants

KS Makarova, YI Wolf, J Iranzo, SA Shmakov… - Nature Reviews …, 2020 - nature.com
The number and diversity of known CRISPR–Cas systems have substantially increased in
recent years. Here, we provide an updated evolutionary classification of CRISPR–Cas …

The pan-immune system of bacteria: antiviral defence as a community resource

A Bernheim, R Sorek - Nature reviews microbiology, 2020 - nature.com
Viruses and their hosts are engaged in a constant arms race leading to the evolution of
antiviral defence mechanisms. Recent studies have revealed that the immune arsenal of …

The biology of CRISPR-Cas: backward and forward

F Hille, H Richter, SP Wong, M Bratovič, S Ressel… - Cell, 2018 - cell.com
In bacteria and archaea, clustered regularly interspaced short palindromic repeats
(CRISPR) and CRISPR-associated (Cas) proteins constitute an adaptive immune system …

Diversity and evolution of class 2 CRISPR–Cas systems

S Shmakov, A Smargon, D Scott, D Cox… - Nature reviews …, 2017 - nature.com
Class 2 CRISPR–Cas systems are characterized by effector modules that consist of a single
multidomain protein, such as Cas9 or Cpf1. We designed a computational pipeline for the …

Microbial defenses against mobile genetic elements and viruses: Who defends whom from what?

EPC Rocha, D Bikard - PLoS biology, 2022 - journals.plos.org
Prokaryotes have numerous mobile genetic elements (MGEs) that mediate horizontal gene
transfer (HGT) between cells. These elements can be costly, even deadly, and cells use …

[HTML][HTML] Structural basis for Cas9 off-target activity

M Pacesa, CH Lin, A Cléry, A Saha, PR Arantes… - Cell, 2022 - cell.com
The target DNA specificity of the CRISPR-associated genome editor nuclease Cas9 is
determined by complementarity to a 20-nucleotide segment in its guide RNA. However …

Cas13-induced cellular dormancy prevents the rise of CRISPR-resistant bacteriophage

AJ Meeske, S Nakandakari-Higa, LA Marraffini - Nature, 2019 - nature.com
Clustered, regularly interspaced, short palindromic repeat (CRISPR) loci in prokaryotes are
composed of 30–40-base-pair repeats separated by equally short sequences of plasmid …

CRISPR-Cas: biology, mechanisms and relevance

F Hille, E Charpentier - … of the royal society B: biological …, 2016 - royalsocietypublishing.org
Prokaryotes have evolved several defence mechanisms to protect themselves from viral
predators. Clustered regularly interspaced short palindromic repeats (CRISPR) and their …

CRISPR-Cas: adapting to change

SA Jackson, RE McKenzie, RD Fagerlund, SN Kieper… - Science, 2017 - science.org
BACKGROUND The arms race between prokaryotes and their perpetually evolving
predators has fueled the evolution of a defense arsenal. The so-called CRISPR-Cas …