Proximity labeling in plants

SL Xu, R Shrestha, SS Karunadasa… - Annual review of plant …, 2023 - annualreviews.org
Proteins are workhorses in the cell; they form stable and more often dynamic, transient
protein–protein interactions, assemblies, and networks and have an intimate interplay with …

Molecular spatiomics by proximity labeling

MG Kang, HW Rhee - Accounts of Chemical Research, 2022 - ACS Publications
Conspectus Proximity labeling can be defined as an enzymatic “in-cell” chemical reaction
that catalyzes the proximity-dependent modification of biomolecules in live cells. Since the …

Advances in enzyme-mediated proximity labeling and its potential for plant research

A Mair, DC Bergmann - Plant Physiology, 2022 - academic.oup.com
Cellular processes rely on the intimate interplay of different molecules, including DNA, RNA,
proteins, and metabolites. Obtaining and integrating data on their abundance and dynamics …

A photo-oxidation driven proximity labeling strategy enables profiling of mitochondrial proteome dynamics in living cells

H Wang, Z Wang, H Gao, J Liu, Z Qiao, B Zhao… - Chemical …, 2022 - pubs.rsc.org
Map** the proteomic landscape of mitochondria with spatiotemporal precision plays a
pivotal role in elucidating the delicate biological functions and complex relationship with …

Potential application of TurboID-based proximity labeling in studying the protein interaction network in plant response to abiotic stress

K Zhang, Y Li, T Huang, Z Li - Frontiers in plant science, 2022 - frontiersin.org
Abiotic stresses are major environmental conditions that reduce plant growth, productivity
and quality. Protein-protein interaction (PPI) approaches can be used to screen stress …

Integrated proteomic and metabolomic analyses of the mitochondrial neurodegenerative disease MELAS

H Li, M Uittenbogaard, R Navarro, M Ahmed… - Molecular omics, 2022 - pubs.rsc.org
MELAS (mitochondrial encephalomyopathy, lactic acidosis, stroke-like episodes) is a
progressive neurodegenerative disease caused by pathogenic mitochondrial DNA variants …

Contaminant Spot Check and Removal Assay (ContamSPOT) for Mass Spectrometry Analysis

N Smeriglio, H Li, WNAB Mazli, K Bendel… - Analytical …, 2024 - ACS Publications
Mass spectrometry (MS) analysis is often challenged by contaminations from detergents,
salts, and polymers that compromise data quality and can damage the chromatography and …

Noninvasive evaluation of PD-L1 expression in non-small cell lung cancer by immunoPET imaging using an acylating agent–modified antibody fragment

Y Cheng, D Shi, R Ye, W Fu, P Ma, Z Si, Z Xu… - European Journal of …, 2023 - Springer
Purpose The aim of this study was to explore an effective 124I labeling strategy and improve
the signal-to-noise ratio when evaluating the expression of PD-L1 using an 124I-iodinated …

Cellular proteomic profiling using proximity labeling by TurboID-NES in microglial and neuronal cell lines

S Sunna, C Bowen, H Zeng, S Rayaprolu… - Molecular & Cellular …, 2023 - ASBMB
Different brain cell types play distinct roles in brain development and disease. Molecular
characterization of cell-specific mechanisms using cell type–specific approaches at the …

Studying the ubiquitin code through biotin-based labelling methods

O Barroso-Gomila, V Muratore, L Merino-Cacho… - Seminars in Cell & …, 2022 - Elsevier
Post-translational modifications of cellular substrates by members of the ubiquitin (Ub) and
ubiquitin-like (UbL) family are crucial for regulating protein homeostasis in organisms. The …