Towards CRISPR/Cas crops–bringing together genomics and genome editing

A Scheben, F Wolter, J Batley, H Puchta… - New …, 2017 - Wiley Online Library
With the rapid increase in the global population and the impact of climate change on
agriculture, there is a need for crops with higher yields and greater tolerance to abiotic …

[HTML][HTML] 5Gs for crop genetic improvement

RK Varshney, P Sinha, VK Singh, A Kumar… - Current Opinion in Plant …, 2020 - Elsevier
Highlights•5G breeding approach brings precision and enhances efficiency in breeding
programs.•Genome, germplasm, gene function, genomic breeding and genome editing are …

Mass spectrometry-based proteomic landscape of rice reveals a post-transcriptional regulatory role of N6-methyladenosine

ST Li, Y Ke, Y Zhu, TY Zhu, H Huang, L Li, Z Hou… - Nature Plants, 2024 - nature.com
Rice is one of the most important staple food and model species in plant biology, yet its
quantitative proteomes are largely uncharacterized. Here we quantify the relative protein …

The Selaginella genome identifies genetic changes associated with the evolution of vascular plants

JA Banks, T Nishiyama, M Hasebe, JL Bowman… - science, 2011 - science.org
Vascular plants appeared~ 410 million years ago, then diverged into several lineages of
which only two survive: the euphyllophytes (ferns and seed plants) and the lycophytes. We …

Uncovering small RNA-mediated responses to phosphate deficiency in Arabidopsis by deep sequencing

LC Hsieh, SI Lin, ACC Shih, JW Chen, WY Lin… - Plant …, 2009 - academic.oup.com
Recent studies have demonstrated the important role of plant microRNAs (miRNAs) under
nutrient deficiencies. In this study, deep sequencing of Arabidopsis (Arabidopsis thaliana) …

Epigenetic reprogramming and small RNA silencing of transposable elements in pollen

RK Slotkin, M Vaughn, F Borges, M Tanurdžić… - Cell, 2009 - cell.com
The mutagenic activity of transposable elements (TEs) is suppressed by epigenetic silencing
and small interfering RNAs (siRNAs), especially in gametes that could transmit transposed …

Global epigenetic and transcriptional trends among two rice subspecies and their reciprocal hybrids

G He, X Zhu, AA Elling, L Chen, X Wang, L Guo… - The Plant …, 2010 - academic.oup.com
The behavior of transcriptomes and epigenomes in hybrids of heterotic parents is of
fundamental interest. Here, we report highly integrated maps of the epigenome, mRNA, and …

Genome-wide discovery and characterization of maize long non-coding RNAs

L Li, SR Eichten, R Shimizu, K Petsch, CT Yeh, W Wu… - Genome biology, 2014 - Springer
Abstract Background Long non-coding RNAs (lncRNAs) are transcripts that are 200 bp or
longer, do not encode proteins, and potentially play important roles in eukaryotic gene …

tRNA-derived small RNAs target transposable element transcripts

G Martinez, SG Choudury, RK Slotkin - Nucleic acids research, 2017 - academic.oup.com
Abstract tRNA-derived RNA fragments (tRFs) are 18–26 nucleotide small RNAs that are not
random degradation products, but are rather specifically cleaved from mature tRNA …

RNA-mediated chromatin-based silencing in plants

M Matzke, T Kanno, L Daxinger, B Huettel… - Current opinion in cell …, 2009 - Elsevier
Plants have evolved an elaborate transcriptional machinery dedicated to eliciting sequence-
specific, chromatin-based gene silencing. Two Pol II-related, plant-specific RNA …