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Aggregation of disordered proteins associated with neurodegeneration
Cellular deposition of protein aggregates, one of the hallmarks of neurodegeneration,
disrupts cellular functions and leads to neuronal death. Mutations, posttranslational …
disrupts cellular functions and leads to neuronal death. Mutations, posttranslational …
Tutorial: a guide for the selection of fast and accurate computational tools for the prediction of intrinsic disorder in proteins
Intrinsic disorder is instrumental for a wide range of protein functions, and its analysis, using
computational predictions from primary structures, complements secondary and tertiary …
computational predictions from primary structures, complements secondary and tertiary …
IUPred3: prediction of protein disorder enhanced with unambiguous experimental annotation and visualization of evolutionary conservation
Intrinsically disordered proteins and protein regions (IDPs/IDRs) exist without a single well-
defined conformation. They carry out important biological functions with multifaceted roles …
defined conformation. They carry out important biological functions with multifaceted roles …
MobiDB: 10 years of intrinsically disordered proteins
The MobiDB database (URL: https://mobidb. org/) is a knowledge base of intrinsically
disordered proteins. MobiDB aggregates disorder annotations derived from the literature …
disordered proteins. MobiDB aggregates disorder annotations derived from the literature …
flDPnn: Accurate intrinsic disorder prediction with putative propensities of disorder functions
G Hu, A Katuwawala, K Wang, Z Wu… - Nature …, 2021 - nature.com
Identification of intrinsic disorder in proteins relies in large part on computational predictors,
which demands that their accuracy should be high. Since intrinsic disorder carries out a …
which demands that their accuracy should be high. Since intrinsic disorder carries out a …
xTrimoPGLM: unified 100B-scale pre-trained transformer for deciphering the language of protein
Protein language models have shown remarkable success in learning biological information
from protein sequences. However, most existing models are limited by either autoencoding …
from protein sequences. However, most existing models are limited by either autoencoding …
IUPred2A: context-dependent prediction of protein disorder as a function of redox state and protein binding
The structural states of proteins include ordered globular domains as well as intrinsically
disordered protein regions that exist as highly flexible conformational ensembles in …
disordered protein regions that exist as highly flexible conformational ensembles in …
Genomic RNA elements drive phase separation of the SARS-CoV-2 nucleocapsid
We report that the SARS-CoV-2 nucleocapsid protein (N-protein) undergoes liquid-liquid
phase separation (LLPS) with viral RNA. N-protein condenses with specific RNA genomic …
phase separation (LLPS) with viral RNA. N-protein condenses with specific RNA genomic …
eIF4F is a thermo-sensing regulatory node in the translational heat shock response
CD Altamirano, MK Kang, MA Jordan, T Borianne… - Molecular Cell, 2024 - cell.com
Heat-shocked cells prioritize the translation of heat shock (HS) mRNAs, but the underlying
mechanism is unclear. We report that HS in budding yeast induces the disassembly of the …
mechanism is unclear. We report that HS in budding yeast induces the disassembly of the …
A de novo evolved gene contributes to rice grain shape difference between indica and japonica
R Chen, N **ao, Y Lu, T Tao, Q Huang, S Wang… - Nature …, 2023 - nature.com
The role of de novo evolved genes from non-coding sequences in regulating morphological
differentiation between species/subspecies remains largely unknown. Here, we show that a …
differentiation between species/subspecies remains largely unknown. Here, we show that a …