Computational approaches streamlining drug discovery

AV Sadybekov, V Katritch - Nature, 2023 - nature.com
Computer-aided drug discovery has been around for decades, although the past few years
have seen a tectonic shift towards embracing computational technologies in both academia …

An update on the nitrogen heterocycle compositions and properties of US FDA-approved pharmaceuticals (2013–2023)

CM Marshall, JG Federice, CN Bell… - Journal of Medicinal …, 2024 - ACS Publications
This Perspective is a continuation of our analysis of US FDA-approved small-molecule drugs
(1938–2012) containing nitrogen heterocycles. In this study we report drug structure and …

Network pharmacology, a promising approach to reveal the pharmacology mechanism of Chinese medicine formula

L Zhao, H Zhang, N Li, J Chen, H Xu, Y Wang… - Journal of …, 2023 - Elsevier
Ethnopharmacological relevance Network pharmacology is a new discipline based on
systems biology theory, biological system network analysis, and multi-target drug molecule …

Microglia ferroptosis is regulated by SEC24B and contributes to neurodegeneration

SK Ryan, M Zelic, Y Han, E Teeple, L Chen… - Nature …, 2023 - nature.com
Iron dysregulation has been implicated in multiple neurodegenerative diseases, including
Parkinson's disease (PD). Iron-loaded microglia are frequently found in affected brain …

Large language models on graphs: A comprehensive survey

B **, G Liu, C Han, M Jiang, H Ji… - IEEE Transactions on …, 2024 - ieeexplore.ieee.org
Large language models (LLMs), such as GPT4 and LLaMA, are creating significant
advancements in natural language processing, due to their strong text encoding/decoding …

Investigating cardiotoxicity related with hERG channel blockers using molecular fingerprints and graph attention mechanism

T Wang, J Sun, Q Zhao - Computers in biology and medicine, 2023 - Elsevier
Human ether-a-go-go-related gene (hERG) channel blockade by small molecules is a big
concern during drug development in the pharmaceutical industry. Failure or inhibition of …

Machine learning in preclinical drug discovery

DB Catacutan, J Alexander, A Arnold… - Nature Chemical …, 2024 - nature.com
Drug-discovery and drug-development endeavors are laborious, costly and time consuming.
These programs can take upward of 12 years and cost US $2.5 billion, with a failure rate of …

Leveraging large language models for predictive chemistry

KM Jablonka, P Schwaller… - Nature Machine …, 2024 - nature.com
Abstract Machine learning has transformed many fields and has recently found applications
in chemistry and materials science. The small datasets commonly found in chemistry …

Rings in clinical trials and drugs: present and future

J Shearer, JL Castro, ADG Lawson… - Journal of medicinal …, 2022 - ACS Publications
We present a comprehensive analysis of all ring systems (both heterocyclic and
nonheterocyclic) in clinical trial compounds and FDA-approved drugs. We show 67% of …

Machine learning in drug discovery: a review

S Dara, S Dhamercherla, SS Jadav, CHM Babu… - Artificial intelligence …, 2022 - Springer
This review provides the feasible literature on drug discovery through ML tools and
techniques that are enforced in every phase of drug development to accelerate the research …