QSAR without borders

EN Muratov, J Bajorath, RP Sheridan… - Chemical Society …, 2020 - pubs.rsc.org
Prediction of chemical bioactivity and physical properties has been one of the most
important applications of statistical and more recently, machine learning and artificial …

COVID-19: A promising cure for the global panic

B Vellingiri, K Jayaramayya, M Iyer… - Science of the total …, 2020 - Elsevier
The novel Coronavirus disease 2019 (COVID-19) is caused by SARS-CoV-2, which is the
causative agent of a potentially fatal disease that is of great global public health concern …

Concepts of artificial intelligence for computer-assisted drug discovery

X Yang, Y Wang, R Byrne, G Schneider… - Chemical …, 2019 - ACS Publications
Artificial intelligence (AI), and, in particular, deep learning as a subcategory of AI, provides
opportunities for the discovery and development of innovative drugs. Various machine …

One molecular fingerprint to rule them all: drugs, biomolecules, and the metabolome

A Capecchi, D Probst, JL Reymond - Journal of cheminformatics, 2020 - Springer
Background Molecular fingerprints are essential cheminformatics tools for virtual screening
and map** chemical space. Among the different types of fingerprints, substructure …

Generative machine learning for de novo drug discovery: A systematic review

DD Martinelli - Computers in Biology and Medicine, 2022 - Elsevier
Recent research on artificial intelligence indicates that machine learning algorithms can
auto-generate novel drug-like molecules. Generative models have revolutionized de novo …

Concepts and applications of chemical fingerprint for hit and lead screening

J Yang, Y Cai, K Zhao, H **e, X Chen - Drug discovery today, 2022 - Elsevier
Highlights•Providing concepts and generation processes of chemical fingerprints.•
Comparing the algorithms and characteristics among different types of fingerprints.• …

Automatic chemical design using a data-driven continuous representation of molecules

R Gómez-Bombarelli, JN Wei, D Duvenaud… - ACS central …, 2018 - ACS Publications
We report a method to convert discrete representations of molecules to and from a
multidimensional continuous representation. This model allows us to generate new …

From machine learning to deep learning: progress in machine intelligence for rational drug discovery

L Zhang, J Tan, D Han, H Zhu - Drug discovery today, 2017 - Elsevier
Highlights•Six commonly used machine learning methods in QSAR models are
summarized.•Newly developed combinatorial QSAR and hybrid QSAR methods are …

Artificial intelligence in drug discovery: applications and techniques

J Deng, Z Yang, I Ojima, D Samaras… - Briefings in …, 2022 - academic.oup.com
Artificial intelligence (AI) has been transforming the practice of drug discovery in the past
decade. Various AI techniques have been used in many drug discovery applications, such …

Interpretation of compound activity predictions from complex machine learning models using local approximations and shapley values

R Rodríguez-Pérez, J Bajorath - Journal of medicinal chemistry, 2019 - ACS Publications
In qualitative or quantitative studies of structure–activity relationships (SARs), machine
learning (ML) models are trained to recognize structural patterns that differentiate between …