Reanalysis suggests that genomic islands of speciation are due to reduced diversity, not reduced gene flow

TE Cruickshank, MW Hahn - Molecular ecology, 2014 - Wiley Online Library
The metaphor of 'genomic islands of speciation'was first used to describe heterogeneous
differentiation among loci between the genomes of closely related species. The biological …

Ecological genomics of local adaptation

O Savolainen, M Lascoux, J Merilä - Nature Reviews Genetics, 2013 - nature.com
It is increasingly important to improve our understanding of the genetic basis of local
adaptation because of its relevance to climate change, crop and animal production, and …

Effects of selection at linked sites on patterns of genetic variability

B Charlesworth, JD Jensen - Annual review of ecology …, 2021 - annualreviews.org
Patterns of variation and evolution at a given site in a genome can be strongly influenced by
the effects of selection at genetically linked sites. In particular, the recombination rates of …

Genomic signatures of selection at linked sites: unifying the disparity among species

AD Cutter, BA Payseur - Nature Reviews Genetics, 2013 - nature.com
Population genetics theory supplies powerful predictions about how natural selection
interacts with genetic linkage to sculpt the genomic landscape of nucleotide polymorphism …

Recent Selective Sweeps in North American Drosophila melanogaster Show Signatures of Soft Sweeps

NR Garud, PW Messer, EO Buzbas, DA Petrov - PLoS genetics, 2015 - journals.plos.org
Adaptation from standing genetic variation or recurrent de novo mutation in large
populations should commonly generate soft rather than hard selective sweeps. In contrast to …

The Many Landscapes of Recombination in Drosophila melanogaster

JM Comeron, R Ratnappan, S Bailin - 2012 - journals.plos.org
Recombination is a fundamental biological process with profound evolutionary implications.
Theory predicts that recombination increases the effectiveness of selection in natural …

Molecular spandrels: tests of adaptation at the genetic level

RDH Barrett, HE Hoekstra - Nature Reviews Genetics, 2011 - nature.com
Although much progress has been made in identifying the genes (and, in rare cases,
mutations) that contribute to phenotypic variation, less is known about the effects that these …

The strength of selection against Neanderthal introgression

I Juric, S Aeschbacher, G Coop - PLoS genetics, 2016 - journals.plos.org
Hybridization between humans and Neanderthals has resulted in a low level of Neanderthal
ancestry scattered across the genomes of many modern-day humans. After hybridization, on …

Tree‐sequence recording in SLiM opens new horizons for forward‐time simulation of whole genomes

BC Haller, J Galloway, J Kelleher… - Molecular ecology …, 2019 - Wiley Online Library
There is an increasing demand for evolutionary models to incorporate relatively realistic
dynamics, ranging from selection at many genomic sites to complex demography …

Evolutionary genetics of plant adaptation

JT Anderson, JH Willis, T Mitchell-Olds - Trends in Genetics, 2011 - cell.com
Plants provide unique opportunities to study the mechanistic basis and evolutionary
processes of adaptation to diverse environmental conditions. Complementary laboratory …