The emerging landscape of spatial profiling technologies

JR Moffitt, E Lundberg, H Heyn - Nature Reviews Genetics, 2022 - nature.com
Improved scale, multiplexing and resolution are establishing spatial nucleic acid and protein
profiling methods as a major pillar for cellular atlas building of complex samples, from …

The expanding vistas of spatial transcriptomics

L Tian, F Chen, EZ Macosko - Nature Biotechnology, 2023 - nature.com
The formation and maintenance of tissue integrity requires complex, coordinated activities
by thousands of genes and their encoded products. Until recently, transcript levels could …

The dawn of spatial omics

D Bressan, G Battistoni, GJ Hannon - Science, 2023 - science.org
Spatial omics has been widely heralded as the new frontier in life sciences. This term
encompasses a wide range of techniques that promise to transform many areas of biology …

Spatial profiling technologies illuminate the tumor microenvironment

O Elhanani, R Ben-Uri, L Keren - Cancer cell, 2023 - cell.com
The tumor microenvironment (TME) is composed of many different cellular and acellular
components that together drive tumor growth, invasion, metastasis, and response to …

[HTML][HTML] A topographic atlas defines developmental origins of cell heterogeneity in the human embryonic lung

A Sountoulidis, S Marco Salas, E Braun, C Avenel… - Nature Cell …, 2023 - nature.com
The lung contains numerous specialized cell types with distinct roles in tissue function and
integrity. To clarify the origins and mechanisms generating cell heterogeneity, we created a …

Direct RNA targeted in situ sequencing for transcriptomic profiling in tissue

H Lee, S Marco Salas, D Gyllborg, M Nilsson - Scientific reports, 2022 - nature.com
Highly multiplexed spatial map** of transcripts within tissues allows for investigation of the
transcriptomic and cellular diversity of mammalian organs previously unseen. Here we …

Enablers and challenges of spatial omics, a melting pot of technologies

T Alexandrov, J Saez‐Rodriguez… - Molecular Systems …, 2023 - embopress.org
Spatial omics has emerged as a rapidly growing and fruitful field with hundreds of
publications presenting novel methods for obtaining spatially resolved information for any …

Spatial transcriptomics: recent developments and insights in respiratory research

WJ Wang, LX Chu, LY He, MJ Zhang, KT Dang… - Military Medical …, 2023 - Springer
The respiratory system's complex cellular heterogeneity presents unique challenges to
researchers in this field. Although bulk RNA sequencing and single-cell RNA sequencing …

Barcoded oligonucleotides ligated on RNA amplified for multiplexed and parallel in situ analyses

S Liu, S Punthambaker, EPR Iyer… - Nucleic acids …, 2021 - academic.oup.com
We present b arcoded o ligonucleotides l igated on R NA a mplified for m ultiplexed and
parallel ins itu analyses (BOLORAMIS), a reverse transcription-free method for spatially …

Optimizing Xenium In Situ data utility by quality assessment and best practice analysis workflows

SM Salas, P Czarnewski, LB Kuemmerle, S Helgadottir… - BioRxiv, 2023 - biorxiv.org
Abstract The Xenium In Situ platform is a new spatial transcriptomics product
commercialized by 10X Genomics capable of map** hundreds of transcripts in situ at a …