CRISPR-Cas systems in bacteria and archaea: versatile small RNAs for adaptive defense and regulation

D Bhaya, M Davison, R Barrangou - Annual review of genetics, 2011 - annualreviews.org
Bacteria and archaea have evolved defense and regulatory mechanisms to cope with
various environmental stressors, including virus attack. This arsenal has been expanded by …

Human gut microbiota: the links with dementia development

R Alkasir, J Li, X Li, M **, B Zhu - Protein & cell, 2017 - academic.oup.com
Dementia is a comprehensive category of brain diseases that is great enough to affect a
person's daily functioning. The most common type of dementia is Alzheimer's disease, which …

SqueezeMeta, a highly portable, fully automatic metagenomic analysis pipeline

J Tamames, F Puente-Sánchez - Frontiers in microbiology, 2019 - frontiersin.org
The improvement of sequencing technologies has facilitated generalization of metagenomic
sequencing, which has become a standard procedure for analyzing the structure and …

[HTML][HTML] The core human microbiome: does it exist and how can we find it? A critical review of the concept

I Sharon, NM Quijada, E Pasolli, M Fabbrini, F Vitali… - Nutrients, 2022 - mdpi.com
The core microbiome, which refers to a set of consistent microbial features across
populations, is of major interest in microbiome research and has been addressed by …

Community-wide analysis of microbial genome sequence signatures

GJ Dick, AF Andersson, BJ Baker, SL Simmons… - Genome biology, 2009 - Springer
Background Analyses of DNA sequences from cultivated microorganisms have revealed
genome-wide, taxa-specific nucleotide compositional characteristics, referred to as genome …

A robust framework for microbial archaeology

C Warinner, A Herbig, A Mann… - Annual review of …, 2017 - annualreviews.org
Microbial archaeology is flourishing in the era of high-throughput sequencing, revealing the
agents behind devastating historical plagues, identifying the cryptic movements of …

Cultivating the uncultured: limits, advances and future challenges

K Alain, J Querellou - Extremophiles, 2009 - Springer
Since the invention of the Petri dish, there have been continuous efforts to improve efficiency
in microbial cultivation. These efforts were devoted to the attainment for diverse growth …

The future of coral reefs: a microbial perspective

TD Ainsworth, RV Thurber, RD Gates - Trends in ecology & evolution, 2010 - cell.com
Microbial communities respond and quickly adapt to disturbance and have central roles in
ecosystem function. Yet, the many roles of coral-associated microbial communities are not …

High temperatures enhance the microbial genetic potential to recycle C and N from necromass in high‐mountain soils

J Donhauser, W Qi, B Bergk‐Pinto… - Global Change …, 2021 - Wiley Online Library
Climate change is strongly affecting high‐mountain soils and warming in particular is
associated with pronounced changes in microbe‐mediated C and N cycling, affecting plant …

Metagenomics and bioinformatics in microbial ecology: current status and beyond

S Hiraoka, C Yang, W Iwasaki - Microbes and environments, 2016 - jstage.jst.go.jp
Metagenomic approaches are now commonly used in microbial ecology to study microbial
communities in more detail, including many strains that cannot be cultivated in the …