Molecular dynamics simulation approach for discovering potential inhibitors against SARS-CoV-2: A structural review

S Ghahremanian, MM Rashidi, K Raeisi… - Journal of molecular …, 2022 - Elsevier
Since the commencement of the novel Coronavirus, the disease has quickly turned into a
worldwide crisis so that there has been growing attention in discovering possible hit …

Methodology-centered review of molecular modeling, simulation, and prediction of SARS-CoV-2

K Gao, R Wang, J Chen, L Cheng, J Frishcosy… - Chemical …, 2022 - ACS Publications
Despite tremendous efforts in the past two years, our understanding of severe acute
respiratory syndrome coronavirus 2 (SARS-CoV-2), virus–host interactions, immune …

Computational investigations of three main drugs and their comparison with synthesized compounds as potent inhibitors of SARS-CoV-2 main protease (Mpro): DFT …

RK Mohapatra, L Perekhoda, M Azam… - Journal of King …, 2020 - pmc.ncbi.nlm.nih.gov
In this study, we examined five previously synthesized compounds and checked their
binding affinity towards the SARS-CoV-2 main protease (Mpro) by molecular docking study …

Accelerating COVID-19 research using molecular dynamics simulation

AK Padhi, SL Rath, T Tripathi - The Journal of Physical Chemistry …, 2021 - ACS Publications
The COVID-19 pandemic has emerged as a global medico-socio-economic disaster. Given
the lack of effective therapeutics against SARS-CoV-2, scientists are racing to disseminate …

Molecular dynamics simulations and diversity selection by extended continuous similarity indices

A Rácz, LM Mihalovits, D Bajusz… - Journal of Chemical …, 2022 - ACS Publications
Molecular dynamics (MD) is a core methodology of molecular modeling and computational
design for the study of the dynamics and temporal evolution of molecular systems. MD …

Synthesis, crystal structure, computational study and anti-virus effect of mixed ligand copper (II) complex with ONS donor Schiff base and 1, 10-phenanthroline

B Mohan, M Choudhary - Journal of Molecular Structure, 2021 - Elsevier
This work deals with the synthesis, crystal structure, computational study and antiviral
potential of mixed ligand copper (II) complex [Cu (L)(phen)](1),(where, H 2 L=(Z)-N'-((E)-2 …

Molecular dynamics simulation and docking analysis of NF-κB protein binding with sulindac acid

S Ahmad, P Bhanu, J Kumar, RK Pathak… - …, 2022 - pmc.ncbi.nlm.nih.gov
It is of interest to document the Molecular Dynamics Simulation and docking analysis of NF-
κB target with sulindac sodium in combating COVID-19 for further consideration. Sulindac is …

In silico antiviral properties of Spirulina platensis phycobiliprotein and phycobilin as natural inhibitor for SARS-CoV-2

HSH Munawaroh, GG Gumilar, RN Pratiwi, SF Khoiriah… - Algal Research, 2024 - Elsevier
The global pandemic COVID-19 in 2019 has led to a continued search for promising
potential molecules to combat human viral diseases. An in silico strategy was attempted to …

Widely-targeted in silico and in vitro evaluation of veratrum alkaloid analogs as FAK inhibitors and dual targeting of FAK and Hh/SMO pathways for cancer therapy: A …

DA Mosoh - International Journal of Biological Macromolecules, 2024 - Elsevier
Abstract Focal Adhesive Kinase (FAK), a key player in aggressive cancers, mediates signals
crucial for progression, invasion, and metastasis. Despite advances in targeted therapies …

The effect of structural variations of heteroleptic Cu (II) complexes of tri‐dentate unsymmetrical Schiff‐base main ligands with pyridine or bithiazole co‐ligands on …

L Ghasemi, M Behzad, A Abedi… - Applied …, 2023 - Wiley Online Library
Meso‐1, 2‐diphenyl‐1, 2‐ethylenediamine was reacted with salicylaldehyde derivatives,
copper (II) perchlorate, and pyridine to produce various four‐coordinated heteroleptic [Cu …