Big data in basic and translational cancer research

P Jiang, S Sinha, K Aldape, S Hannenhalli… - Nature Reviews …, 2022 - nature.com
Historically, the primary focus of cancer research has been molecular and clinical studies of
a few essential pathways and genes. Recent years have seen the rapid accumulation of …

Pan-cancer analysis of whole genomes

Nature, 2020 - nature.com
Cancer is driven by genetic change, and the advent of massively parallel sequencing has
enabled systematic documentation of this variation at the whole-genome scale,–. Here we …

Integration of CRISPR/Cas9 with artificial intelligence for improved cancer therapeutics

AA Bhat, S Nisar, S Mukherjee, N Saha… - Journal of translational …, 2022 - Springer
Gene editing has great potential in treating diseases caused by well-characterized
molecular alterations. The introduction of clustered regularly interspaced short palindromic …

Therapy-induced APOBEC3A drives evolution of persistent cancer cells

H Isozaki, R Sakhtemani, A Abbasi, N Nikpour… - Nature, 2023 - nature.com
Acquired drug resistance to anticancer targeted therapies remains an unsolved clinical
problem. Although many drivers of acquired drug resistance have been identified,,–, the …

[HTML][HTML] Pan-cancer proteogenomics connects oncogenic drivers to functional states

Y Li, E Porta-Pardo, C Tokheim, MH Bailey, TM Yaron… - Cell, 2023 - cell.com
Cancer driver events refer to key genetic aberrations that drive oncogenesis; however, their
exact molecular mechanisms remain insufficiently understood. Here, our multi-omics pan …

Association between sex and immune-related adverse events during immune checkpoint inhibitor therapy

Y **g, Y Zhang, J Wang, K Li, X Chen… - JNCI: Journal of the …, 2021 - academic.oup.com
Background Accumulated evidence supports the existence of sex-associated differences in
immune systems. Understanding the role of sex in immune-related adverse events (irAEs) is …

The genomic landscape across 474 surgically accessible epileptogenic human brain lesions

JA López-Rivera, C Leu, M Macnee, J Khoury… - Brain, 2023 - academic.oup.com
Understanding the exact molecular mechanisms involved in the aetiology of epileptogenic
pathologies with or without tumour activity is essential for improving treatment of drug …

Guiding the global evolution of cytogenetic testing for hematologic malignancies

YMN Akkari, LB Baughn, AM Dubuc… - Blood, The Journal …, 2022 - ashpublications.org
Cytogenetics has long represented a critical component in the clinical evaluation of
hematologic malignancies. Chromosome banding studies provide a simultaneous snapshot …

implementing whole genome sequencing (WGS) in clinical practice: advantages, challenges, and future perspectives

P Brlek, L Bulić, M Bračić, P Projić, V Škaro, N Shah… - Cells, 2024 - mdpi.com
The integration of whole genome sequencing (WGS) into all aspects of modern medicine
represents the next step in the evolution of healthcare. Using this technology, scientists and …

Whole genome sequencing in clinical practice

FO Bagger, L Borgwardt, AS Jespersen… - BMC Medical …, 2024 - Springer
Whole genome sequencing (WGS) is becoming the preferred method for molecular genetic
diagnosis of rare and unknown diseases and for identification of actionable cancer drivers …