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A review on computer model calibration
Abstract Model calibration is crucial for optimizing the performance of complex computer
models across various disciplines. In the era of Industry 4.0, symbolizing rapid technological …
models across various disciplines. In the era of Industry 4.0, symbolizing rapid technological …
Nonnegative spatial factorization applied to spatial genomics
FW Townes, BE Engelhardt - Nature methods, 2023 - nature.com
Nonnegative matrix factorization (NMF) is widely used to analyze high-dimensional count
data because, in contrast to real-valued alternatives such as factor analysis, it produces an …
data because, in contrast to real-valued alternatives such as factor analysis, it produces an …
A case study competition among methods for analyzing large spatial data
The Gaussian process is an indispensable tool for spatial data analysts. The onset of the
“big data” era, however, has lead to the traditional Gaussian process being computationally …
“big data” era, however, has lead to the traditional Gaussian process being computationally …
spOccupancy: An R package for single‐species, multi‐species, and integrated spatial occupancy models
Occupancy modelling is a common approach to assess species distribution patterns, while
explicitly accounting for false absences in detection–nondetection data. Numerous …
explicitly accounting for false absences in detection–nondetection data. Numerous …
A general framework for Vecchia approximations of Gaussian processes
M Katzfuss, J Guinness - Statistical Science, 2021 - JSTOR
Gaussian processes (GPs) are commonly used as models for functions, time series, and
spatial fields, but they are computationally infeasible for large datasets. Focusing on the …
spatial fields, but they are computationally infeasible for large datasets. Focusing on the …
nnSVG for the scalable identification of spatially variable genes using nearest-neighbor Gaussian processes
Feature selection to identify spatially variable genes or other biologically informative genes
is a key step during analyses of spatially-resolved transcriptomics data. Here, we propose …
is a key step during analyses of spatially-resolved transcriptomics data. Here, we propose …
Random forests for spatially dependent data
Spatial linear mixed-models, consisting of a linear covariate effect and a Gaussian process
(GP) distributed spatial random effect, are widely used for analyses of geospatial data. We …
(GP) distributed spatial random effect, are widely used for analyses of geospatial data. We …
Variational nearest neighbor Gaussian process
Variational approximations to Gaussian processes (GPs) typically use a small set of
inducing points to form a low-rank approximation to the covariance matrix. In this work, we …
inducing points to form a low-rank approximation to the covariance matrix. In this work, we …
Gaussian process boosting
F Sigrist - Journal of Machine Learning Research, 2022 - jmlr.org
We introduce a novel way to combine boosting with Gaussian process and mixed effects
models. This allows for relaxing, first, the zero or linearity assumption for the prior mean …
models. This allows for relaxing, first, the zero or linearity assumption for the prior mean …
A machine learning approach for remote sensing data gap-filling with open-source implementation: An example regarding land surface temperature, surface albedo …
Satellite remote sensing has now become a unique tool for continuous and predictable
monitoring of geosystems at various scales, observing the dynamics of different geophysical …
monitoring of geosystems at various scales, observing the dynamics of different geophysical …