A review on computer model calibration

CL Sung, R Tuo - Wiley Interdisciplinary Reviews …, 2024 - Wiley Online Library
Abstract Model calibration is crucial for optimizing the performance of complex computer
models across various disciplines. In the era of Industry 4.0, symbolizing rapid technological …

Nonnegative spatial factorization applied to spatial genomics

FW Townes, BE Engelhardt - Nature methods, 2023 - nature.com
Nonnegative matrix factorization (NMF) is widely used to analyze high-dimensional count
data because, in contrast to real-valued alternatives such as factor analysis, it produces an …

A case study competition among methods for analyzing large spatial data

MJ Heaton, A Datta, AO Finley, R Furrer… - Journal of agricultural …, 2019 - Springer
The Gaussian process is an indispensable tool for spatial data analysts. The onset of the
“big data” era, however, has lead to the traditional Gaussian process being computationally …

spOccupancy: An R package for single‐species, multi‐species, and integrated spatial occupancy models

JW Doser, AO Finley, M Kéry… - Methods in Ecology and …, 2022 - Wiley Online Library
Occupancy modelling is a common approach to assess species distribution patterns, while
explicitly accounting for false absences in detection–nondetection data. Numerous …

A general framework for Vecchia approximations of Gaussian processes

M Katzfuss, J Guinness - Statistical Science, 2021 - JSTOR
Gaussian processes (GPs) are commonly used as models for functions, time series, and
spatial fields, but they are computationally infeasible for large datasets. Focusing on the …

nnSVG for the scalable identification of spatially variable genes using nearest-neighbor Gaussian processes

LM Weber, A Saha, A Datta, KD Hansen… - Nature …, 2023 - nature.com
Feature selection to identify spatially variable genes or other biologically informative genes
is a key step during analyses of spatially-resolved transcriptomics data. Here, we propose …

Random forests for spatially dependent data

A Saha, S Basu, A Datta - Journal of the American Statistical …, 2023 - Taylor & Francis
Spatial linear mixed-models, consisting of a linear covariate effect and a Gaussian process
(GP) distributed spatial random effect, are widely used for analyses of geospatial data. We …

Variational nearest neighbor Gaussian process

L Wu, G Pleiss, JP Cunningham - … Conference on Machine …, 2022 - proceedings.mlr.press
Variational approximations to Gaussian processes (GPs) typically use a small set of
inducing points to form a low-rank approximation to the covariance matrix. In this work, we …

Gaussian process boosting

F Sigrist - Journal of Machine Learning Research, 2022 - jmlr.org
We introduce a novel way to combine boosting with Gaussian process and mixed effects
models. This allows for relaxing, first, the zero or linearity assumption for the prior mean …

A machine learning approach for remote sensing data gap-filling with open-source implementation: An example regarding land surface temperature, surface albedo …

M Sarafanov, E Kazakov, NO Nikitin, AV Kalyuzhnaya - Remote Sensing, 2020 - mdpi.com
Satellite remote sensing has now become a unique tool for continuous and predictable
monitoring of geosystems at various scales, observing the dynamics of different geophysical …