Sequencing pools of individuals—mining genome-wide polymorphism data without big funding

C Schlötterer, R Tobler, R Kofler, V Nolte - Nature Reviews Genetics, 2014 - nature.com
The analysis of polymorphism data is becoming increasingly important as a complementary
tool to classical genetic analyses. Nevertheless, despite plunging sequencing costs …

New strategies and tools in quantitative genetics: how to go from the phenotype to the genotype

C Bazakos, M Hanemian, C Trontin… - Annual Review of …, 2017 - annualreviews.org
Quantitative genetics has a long history in plants: It has been used to study specific
biological processes, identify the factors important for trait evolution, and breed new crop …

Rapid evolution of enormous, multichromosomal genomes in flowering plant mitochondria with exceptionally high mutation rates

DB Sloan, AJ Alverson, JP Chuckalovcak, M Wu… - PLoS …, 2012 - journals.plos.org
Genome size and complexity vary tremendously among eukaryotic species and their
organelles. Comparisons across deeply divergent eukaryotic lineages have suggested that …

Towards a comprehensive picture of C-to-U RNA editing sites in angiosperm mitochondria

AA Edera, CL Gandini, MV Sanchez-Puerta - Plant Molecular Biology, 2018 - Springer
Key message Our understanding of the dynamic and evolution of RNA editing in
angiosperms is in part limited by the few editing sites identified to date. This study identified …

Bs RAD seq: screening DNA methylation in natural populations of non‐model species

E Trucchi, AB Mazzarella, GD Gilfillan… - Molecular …, 2016 - Wiley Online Library
Epigenetic modifications are expected to occur at a much faster rate than genetic mutations,
potentially causing isolated populations to stochastically drift apart, or if they are subjected to …

Signatures of Rapid Evolution in Urban and Rural Transcriptomes of White-Footed Mice (Peromyscus leucopus) in the New York Metropolitan Area

SE Harris, J Munshi-South, C Obergfell, R O'Neill - PLoS One, 2013 - journals.plos.org
Urbanization is a major cause of ecological degradation around the world, and human
settlement in large cities is accelerating. New York City (NYC) is one of the oldest and most …

Genomic analyses suggest parallel ecological divergence in Heliosperma pusillum (Caryophyllaceae)

E Trucchi, B Frajman, THA Haverkamp… - New …, 2017 - Wiley Online Library
The mosaic distribution of interbreeding taxa with contrasting ecology and morphology offers
an opportunity to study microevolutionary dynamics during ecological divergence. We …

Intraspecific variation in mitochondrial genome sequence, structure, and gene content in Silene vulgaris, an angiosperm with pervasive cytoplasmic male sterility

DB Sloan, K Müller, DE McCauley, DR Taylor… - New …, 2012 - Wiley Online Library
In angiosperms, mitochondrial‐encoded genes can cause cytoplasmic male sterility (CMS),
resulting in the coexistence of female and hermaphroditic individuals (gynodioecy). We …

Transcriptome and gene expression analysis of DHA producer Aurantiochytrium under low temperature conditions

Z Ma, Y Tan, G Cui, Y Feng, Q Cui, X Song - Scientific reports, 2015 - nature.com
Aurantiochytrium is a promising docosahexaenoic acid (DHA) production candidate due to
its fast growth rate and high proportions of lipid and DHA content. In this study, high …

Polygenic routes lead to parallel altitudinal adaptation in Heliosperma pusillum (Caryophyllaceae)

A Szukala, J Lovegrove‐Walsh, H Luqman… - Molecular …, 2023 - Wiley Online Library
Understanding how organisms adapt to the environment is a major goal of modern biology.
Parallel evolution—the independent evolution of similar phenotypes in different populations …