Review of causal discovery methods based on graphical models

C Glymour, K Zhang, P Spirtes - Frontiers in genetics, 2019 - frontiersin.org
A fundamental task in various disciplines of science, including biology, is to find underlying
causal relations and make use of them. Causal relations can be seen if interventions are …

Single-cell RNA sequencing technologies and bioinformatics pipelines

B Hwang, JH Lee, D Bang - Experimental & molecular medicine, 2018 - nature.com
Rapid progress in the development of next-generation sequencing (NGS) technologies in
recent years has provided many valuable insights into complex biological systems, ranging …

Sparse and compositionally robust inference of microbial ecological networks

ZD Kurtz, CL Müller, ER Miraldi… - PLoS computational …, 2015 - journals.plos.org
16S ribosomal RNA (rRNA) gene and other environmental sequencing techniques provide
snapshots of microbial communities, revealing phylogeny and the abundances of microbial …

Biosynthesis and biological functions of terpenoids in plants

D Tholl - Biotechnology of isoprenoids, 2015 - Springer
<? xm-replace_text {Heading}?> Abstract Terpenoids (isoprenoids) represent the largest
and most diverse class of chemicals among the myriad compounds produced by plants …

Terpene synthases as metabolic gatekeepers in the evolution of plant terpenoid chemical diversity

PS Karunanithi, P Zerbe - Frontiers in plant science, 2019 - frontiersin.org
Terpenoids comprise tens of thousands of small molecule natural products that are widely
distributed across all domains of life. Plants produce by far the largest array of terpenoids …

MissForest—non-parametric missing value imputation for mixed-type data

DJ Stekhoven, P Bühlmann - Bioinformatics, 2012 - academic.oup.com
Motivation: Modern data acquisition based on high-throughput technology is often facing the
problem of missing data. Algorithms commonly used in the analysis of such large-scale data …

Network analysis of the MVA and MEP pathways for isoprenoid synthesis

E Vranová, D Coman, W Gruissem - Annual review of plant …, 2013 - annualreviews.org
Isoprenoid biosynthesis is essential for all living organisms, and isoprenoids are also of
industrial and agricultural interest. All isoprenoids are derived from prenyl diphosphate …

An overview of the estimation of large covariance and precision matrices

J Fan, Y Liao, H Liu - The Econometrics Journal, 2016 - academic.oup.com
The estimation of large covariance and precision matrices is fundamental in modern
multivariate analysis. However, problems arise from the statistical analysis of large panel …

[图书][B] Statistical foundations of data science

J Fan, R Li, CH Zhang, H Zou - 2020 - taylorfrancis.com
Statistical Foundations of Data Science gives a thorough introduction to commonly used
statistical models, contemporary statistical machine learning techniques and algorithms …

[图书][B] Statistical analysis of network data with R

ED Kolaczyk, G Csárdi - 2014 - Springer
Networks and network analysis are arguably one of the largest growth areas of the early
twenty-first century in the quantitative sciences. Despite roots in social network analysis …