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The population genetics of pathogenic Escherichia coli
Escherichia coli is a commensal of the vertebrate gut that is increasingly involved in various
intestinal and extra-intestinal infections as an opportunistic pathogen. Numerous pathotypes …
intestinal and extra-intestinal infections as an opportunistic pathogen. Numerous pathotypes …
Genomics and pathotypes of the many faces of Escherichia coli
J Geurtsen, M de Been, E Weerdenburg… - FEMS microbiology …, 2022 - academic.oup.com
Escherichia coli is the most researched microbial organism in the world. Its varied impact on
human health, consisting of commensalism, gastrointestinal disease, or extraintestinal …
human health, consisting of commensalism, gastrointestinal disease, or extraintestinal …
The EnteroBase user's guide, with case studies on Salmonella transmissions, Yersinia pestis phylogeny, and Escherichia core genomic diversity
EnteroBase is an integrated software environment that supports the identification of global
population structures within several bacterial genera that include pathogens. Here, we …
population structures within several bacterial genera that include pathogens. Here, we …
Virulence factors, prevalence and potential transmission of extraintestinal pathogenic Escherichia coli isolated from different sources: recent reports
J Sarowska, B Futoma-Koloch, A Jama-Kmiecik… - Gut pathogens, 2019 - Springer
Extraintestinal pathogenic E. coli (ExPEC) are facultative pathogens that are part of the
normal human intestinal flora. The ExPEC group includes uropathogenic E. coli (UPEC) …
normal human intestinal flora. The ExPEC group includes uropathogenic E. coli (UPEC) …
Global extraintestinal pathogenic Escherichia coli (ExPEC) lineages
AR Manges, HM Geum, A Guo, TJ Edens… - Clinical microbiology …, 2019 - journals.asm.org
SUMMARY Extraintestinal pathogenic Escherichia coli (ExPEC) strains are responsible for a
majority of human extraintestinal infections globally, resulting in enormous direct medical …
majority of human extraintestinal infections globally, resulting in enormous direct medical …
Antimicrobial resistance and population genomics of multidrug-resistant Escherichia coli in pig farms in mainland China
The expanding use of antimicrobials in livestock is an important contributor to the worldwide
rapid increase in antimicrobial resistance (AMR). However, large-scale studies on AMR in …
rapid increase in antimicrobial resistance (AMR). However, large-scale studies on AMR in …
ClermonTy**: an easy-to-use and accurate in silico method for Escherichia genus strain phyloty**
The genus Escherichia is composed of Escherichia albertii, E. fergusonii, five cryptic
Escherichia clades and E. coli sensu stricto. Furthermore, the E. coli species can be divided …
Escherichia clades and E. coli sensu stricto. Furthermore, the E. coli species can be divided …
Deciphering microbial interactions and detecting keystone species with co-occurrence networks
Co-occurrence networks produced from microbial survey sequencing data are frequently
used to identify interactions between community members. While this approach has …
used to identify interactions between community members. While this approach has …
Comprehensive resistome analysis reveals the prevalence of NDM and MCR-1 in Chinese poultry production
By 2030, the global population will be 8.5 billion, placing pressure on international poultry
production, of which China is a key producer 1. From April 2017, China will implement the …
production, of which China is a key producer 1. From April 2017, China will implement the …
Urinary tract infection syndromes: occurrence, recurrence, bacteriology, risk factors, and disease burden
Urinary tract infection (UTI), an infection anywhere in the urinary tract (urethra, bladder,
ureters, or kidneys) is very common. In 2007 in the United States there were 10.5 million …
ureters, or kidneys) is very common. In 2007 in the United States there were 10.5 million …