[HTML][HTML] Designing future crops: genomics-assisted breeding comes of age

RK Varshney, A Bohra, J Yu, A Graner, Q Zhang… - Trends in plant …, 2021 - cell.com
Over the past decade, genomics-assisted breeding (GAB) has been instrumental in
harnessing the potential of modern genome resources and characterizing and exploiting …

[HTML][HTML] De novo domestication: an alternative route toward new crops for the future

AR Fernie, J Yan - Molecular plant, 2019 - cell.com
Current global agricultural production must feed over 7 billion people. However, productivity
varies greatly across the globe and is under threat from both increased competitions for land …

Multiple domestications of Asian rice

CY **g, FM Zhang, XH Wang, MX Wang, L Zhou, Z Cai… - Nature plants, 2023 - nature.com
The origin of domesticated Asian rice (Oryza sativa L.) has been controversial for more than
half a century. The debates have focused on two leading hypotheses: a single domestication …

A reference genome for pea provides insight into legume genome evolution

J Kreplak, MA Madoui, P Cápal, P Novák, K Labadie… - Nature …, 2019 - nature.com
We report the first annotated chromosome-level reference genome assembly for pea, Gregor
Mendel's original genetic model. Phylogenetics and paleogenomics show genomic …

The genome of cultivated peanut provides insight into legume karyotypes, polyploid evolution and crop domestication

W Zhuang, H Chen, M Yang, J Wang, MK Pandey… - Nature …, 2019 - nature.com
High oil and protein content make tetraploid peanut a leading oil and food legume. Here we
report a high-quality peanut genome sequence, comprising 2.54 Gb with 20 …

Nuclear phylotranscriptomics and phylogenomics support numerous polyploidization events and hypotheses for the evolution of rhizobial nitrogen-fixing symbiosis in …

Y Zhao, R Zhang, KW Jiang, J Qi, Y Hu, J Guo, R Zhu… - Molecular plant, 2021 - cell.com
Fabaceae are the third largest angiosperm family, with 765 genera and∼ 19 500 species.
They are important both economically and ecologically, and global Fabaceae crops are …

Gene duplication and evolution in recurring polyploidization–diploidization cycles in plants

X Qiao, Q Li, H Yin, K Qi, L Li, R Wang, S Zhang… - Genome biology, 2019 - Springer
Background The sharp increase of plant genome and transcriptome data provide valuable
resources to investigate evolutionary consequences of gene duplication in a range of taxa …

Phylogenomics reveals multiple losses of nitrogen-fixing root nodule symbiosis

M Griesmann, Y Chang, X Liu, Y Song, G Haberer… - Science, 2018 - science.org
INTRODUCTION Access to nutrients such as nitrogen is required for plant growth. Legumes
and nine additional plant families benefit from the nitrogen-fixing root nodule (NFN) …

Genomic analyses of primitive, wild and cultivated citrus provide insights into asexual reproduction

X Wang, Y Xu, S Zhang, L Cao, Y Huang, J Cheng… - Nature …, 2017 - nature.com
The emergence of apomixis—the transition from sexual to asexual reproduction—is a
prominent feature of modern citrus. Here we de novo sequenced and comprehensively …

Widespread natural variation of DNA methylation within angiosperms

CE Niederhuth, AJ Bewick, L Ji, MS Alabady, KD Kim… - Genome biology, 2016 - Springer
Background DNA methylation is an important feature of plant epigenomes, involved in the
formation of heterochromatin and affecting gene expression. Extensive variation of DNA …