Molecular networks in Network Medicine: Development and applications

EK Silverman, HHHW Schmidt… - … Systems Biology and …, 2020 - Wiley Online Library
Network Medicine applies network science approaches to investigate disease
pathogenesis. Many different analytical methods have been used to infer relevant molecular …

Network medicine for patients' stratification: From single‐layer to multi‐omics

M Petti, L Farina - WIREs Mechanisms of Disease, 2023 - Wiley Online Library
Precision medicine research increasingly relies on the integrated analysis of multiple types
of omics. In the era of big data, the large availability of different health‐related information …

XGDAG: explainable gene–disease associations via graph neural networks

A Mastropietro, G De Carlo, A Anagnostopoulos - Bioinformatics, 2023 - academic.oup.com
Motivation Disease gene prioritization consists in identifying genes that are likely to be
involved in the mechanisms of a given disease, providing a ranking of such genes. Recently …

Quantum network medicine: rethinking medicine with network science and quantum algorithms

S Maniscalco, EM Borrelli, D Cavalcanti, C Foti… - arxiv preprint arxiv …, 2022 - arxiv.org
Scientific and technological advances in medicine and systems biology have unequivocally
shown that health and disease must be viewed in the context of the interplay among multiple …

[HTML][HTML] A Study and Analysis of Disease Identification using Genomic Sequence Processing Models: An Empirical Review

SK Ahuja, DD Shrimankar, AR Durge - Current Genomics, 2023 - ncbi.nlm.nih.gov
Human gene sequences are considered a primary source of comprehensive information
about different body conditions. A wide variety of diseases including cancer, heart issues …

Networks as biomarkers: Uses and purposes

C Alfano, L Farina, M Petti - Genes, 2023 - mdpi.com
Networks-based approaches are often used to analyze gene expression data or protein–
protein interactions but are not usually applied to study the relationships between different …

[HTML][HTML] Molecular network analysis of hormonal contraceptives side effects via database integration

M Petti, C Alfano, L Farina - Informatics in Medicine Unlocked, 2023 - Elsevier
Hormonal contraceptives (HCs) have been shown to be safe and effective when used
correctly and consistently, however, as other classes of drugs, they are also associated with …

Moses: a new approach to integrate interactome topology and functional features for disease gene prediction

M Petti, L Farina, F Francone, S Lucidi, A Macali… - Genes, 2021 - mdpi.com
Disease gene prediction is to date one of the main computational challenges of precision
medicine. It is still uncertain if disease genes have unique functional properties that …

Specific circulating miRNAs are associated with plasma lipids in a healthy American cohort

LW Evans, B Durbin-Johnson… - Physiological …, 2024 - journals.physiology.org
Low-density lipoprotein cholesterol (LDL-c) is both a therapeutic target and a risk factor for
cardiovascular disease (CVD). MicroRNA (miRNA) has been shown to regulate cholesterol …

Optimal gene prioritization and disease prediction using knowledge based ontology structure

PN Jeipratha, B Vasudevan - Biomedical Signal Processing and Control, 2023 - Elsevier
Prioritizing candidate genes is essential for genome-based diagnostics of various hereditary
disorders. Furthermore, it is a difficult task with particular and noisy information about genes …