Adding the third dimension to virus life cycles: three-dimensional reconstruction of icosahedral viruses from cryo-electron micrographs

TS Baker, NH Olson, SD Fuller - Microbiology and Molecular …, 1999 - Am Soc Microbiol
Viruses are cellular parasites. The linkage between viral and host functions makes the study
of a viral life cycle an important key to cellular functions. A deeper understanding of many …

Automatic particle detection in electron microscopy

WV Nicholson, RM Glaeser - Journal of Structural Biology, 2001 - Elsevier
Advances in cryoEM and single-particle reconstruction have led to results at increasingly
high resolutions. However, to sustain continuing improvements in resolution it will be …

EMAN: semiautomated software for high-resolution single-particle reconstructions

SJ Ludtke, PR Baldwin, W Chiu - Journal of structural biology, 1999 - Elsevier
We present EMAN (Electron Micrograph ANalysis), a software package for performing
semiautomated single-particle reconstructions from transmission electron micrographs. The …

[LIVRE][B] Three-dimensional electron microscopy of macromolecular assemblies: visualization of biological molecules in their native state

J Frank - 2006 - books.google.com
Cryoelectron microscopy of biological molecules is among the hottest growth areas in
biophysics and structural biology at present, and Frank is arguably the most distinguished …

Particle finding in electron micrographs using a fast local correlation algorithm

AM Roseman - Ultramicroscopy, 2003 - Elsevier
A versatile tool for selecting particles from electron micrographs, intended for single particle
analysis and three-dimensional reconstruction, is presented. It is based on a local real …

Local average intensity-based method for identifying spherical particles in electron micrographs

T Kivioja, J Ravantti, A Verkhovsky, E Ukkonen… - Journal of structural …, 2000 - Elsevier
Amethod is presented that reliably detects spherical viruses from a wide variety of noisy low-
contrast electron micrographs. Such detection is one of the first image analysis steps in the …

Automatic particle detection through efficient Hough transforms

Y Zhu, B Carragher, F Mouche… - IEEE transactions on …, 2003 - ieeexplore.ieee.org
Manual selection of single particles in images acquired using cryo-electron microscopy
(cryoEM) will become a significant bottleneck when a very large number of images are …

Virus particle detection by convolutional neural network in transmission electron microscopy images

E Ito, T Sato, D Sano, E Utagawa, T Kato - Food and environmental …, 2018 - Springer
A new computational method for the detection of virus particles in transmission electron
microscopy (TEM) images is presented. Our approach is to use a convolutional neural …

Detecting circular and rectangular particles based on geometric feature detection in electron micrographs

Z Yu, C Bajaj - Journal of Structural Biology, 2004 - Elsevier
Accurate and automatic particle detection from cryo-electron microscopy (cryo-EM images)
is very important for high-resolution reconstruction of large macromolecular structures. In this …

Fast automatic particle picking from cryo-electron micrographs using a locally normalized cross-correlation function: a case study

BK Rath, J Frank - Journal of Structural Biology, 2004 - Elsevier
Recent progress in single-particle reconstruction methods and cryo-EM techniques has led
to the determination of macromolecular structures with unprecedented resolution. The …