MLatom 3: A Platform for Machine Learning-Enhanced Computational Chemistry Simulations and Workflows

PO Dral, F Ge, YF Hou, P Zheng, Y Chen… - Journal of Chemical …, 2024 - ACS Publications
Machine learning (ML) is increasingly becoming a common tool in computational chemistry.
At the same time, the rapid development of ML methods requires a flexible software …

Energy-conserving molecular dynamics is not energy conserving

L Zhang, YF Hou, F Ge, PO Dral - Physical Chemistry Chemical …, 2023 - pubs.rsc.org
Molecular dynamics (MD) is a widely-used tool for simulating molecular and materials
properties. It is common wisdom that molecular dynamics simulations should obey physical …

Harmonic Scale Factors of Fundamental Transitions for Dispersion‐corrected Quantum Chemical Methods

DS Tikhonov, I Gordiy, DA Iakovlev… - …, 2024 - Wiley Online Library
This work provides a procedure and database for obtaining the vibrational frequency scale
factors that align quantum chemically computed harmonic frequencies with experimental …

Regularized weighted sine least-squares spectral analysis for gas electron diffraction data

DS Tikhonov - The Journal of Chemical Physics, 2023 - pubs.aip.org
Here, we present a new approach for obtaining radial distribution functions (RDF) from the
electron diffraction data using a regularized weighted sine least-squares spectral analysis. It …

Describing nuclear quantum effects in vibrational properties using molecular dynamics with Wigner sampling

DS Tikhonov, YV Vishnevskiy - Physical Chemistry Chemical Physics, 2023 - pubs.rsc.org
In this work we discuss the generally applicable Wigner sampling and introduce a new,
simplified Wigner sampling method, for computationally effective modeling of molecular …

Hydrogen dynamics in solid formic acid: insights from simulations with quantum colored-noise thermostats

K Drużbicki, M Krzystyniak, D Hollas… - Journal of physics …, 2018 - iopscience.iop.org
With an increase of computational capabilities, ab initio molecular dynamics becomes the
natural choice for exploring the nuclear dynamics of solids. As based on classical …

Ground electronic state multiplicity and equilibrium molecular structure of cobalt etioporphyrin-II by gas electron diffraction experiment and quantum chemical …

AE Pogonin, AV Eroshin, GV Girichev - Journal of Molecular Structure, 2025 - Elsevier
The study of the electronic and geometric structure of cobalt etioporphyrin-II (CoEP-II) and
parent cobalt porphyrin (CoP) molecules was carried out using density functional theory …

Heavy-element reactions database (herdb): Relativistic ab initio geometries and energies for actinide compounds

N Andreadi, A Mitrofanov, P Matveev… - Inorganic …, 2020 - ACS Publications
Actinide chemistry appears to be a challenge for both experimentalists and theoreticians.
Radioactivity and computational obstacles lead to a lack of heterogeneous data describing …

Gas-phase structures of hemiporphyrazine and dicarbahemiporphyrazine: Key role of interactions inside coordination cavity

AA Otlyotov, YA Zhabanov, AE Pogonin… - Journal of Molecular …, 2019 - Elsevier
The structures of free hemiporphyrazine and dicarbahemiporphyrazine molecules were
determined by gas-phase electron diffraction and DFT calculations. Distance corrections (re …

Nitroxoline molecule: planar or not? A story of battle between π–π conjugation and interatomic repulsion

DS Tikhonov, DI Sharapa, AA Otlyotov… - The Journal of …, 2018 - ACS Publications
The conformational properties of the nitro group in nitroxoline (8-hydroxy-5-nitroquinoline,
NXN) were investigated in the gas phase by means of gas electron diffraction (GED) and …