Multiomic analysis of cytokines in immuno-oncology

V Jurisic - Expert review of proteomics, 2020 - Taylor & Francis
Introduction: Cytokines are a diverse group of peptides produced by different cell types
including cancer cells and various subpopulations of immune system cells. They exert their …

Single-cell mass cytometry for analysis of immune system functional states

ZB Bjornson, GP Nolan, WJ Fantl - Current opinion in immunology, 2013 - Elsevier
Highlights•Quantitative measurements of 40 proteins or mRNA species per cell.•Antibodies
labeled with isotopes instead of fluorophores.•Deep cell profiling of functional network …

A continuous molecular roadmap to iPSC reprogramming through progression analysis of single-cell mass cytometry

ER Zunder, E Lujan, Y Goltsev, M Wernig, GP Nolan - Cell stem cell, 2015 - cell.com
To analyze cellular reprogramming at the single-cell level, mass cytometry was used to
simultaneously measure markers of pluripotency, differentiation, cell-cycle status, and …

OpenCyto: an open source infrastructure for scalable, robust, reproducible, and automated, end-to-end flow cytometry data analysis

G Finak, J Frelinger, W Jiang, EW Newell… - PLoS computational …, 2014 - journals.plos.org
Flow cytometry is used increasingly in clinical research for cancer, immunology and
vaccines. Technological advances in cytometry instrumentation are increasing the size and …

The Interleukin‐1 (IL‐1) superfamily cytokines and their single nucleotide polymorphisms (SNPs)

P Behzadi, AS Sameer, S Nissar… - Journal of …, 2022 - Wiley Online Library
Interleukins (ILs)—which are important members of cytokines—consist of a vast group of
molecules, including a wide range of immune mediators that contribute to the immunological …

Visualization and cellular hierarchy inference of single-cell data using SPADE

B Anchang, TDP Hart, SC Bendall, P Qiu, Z Bjornson… - Nature protocols, 2016 - nature.com
High-throughput single-cell technologies provide an unprecedented view into cellular
heterogeneity, yet they pose new challenges in data analysis and interpretation. In this …

Immune cell profiling in cancer: molecular approaches to cell-specific identification

YA Lyons, SY Wu, WW Overwijk, KA Baggerly… - NPJ precision …, 2017 - nature.com
The immune system has many important regulatory roles in cancer development and
progression. Given the emergence of effective immune therapies against many cancers …

[HTML][HTML] Vaccine inoculation route modulates early immunity and consequently antigen-specific immune response

P Rosenbaum, N Tchitchek, C Joly… - Frontiers in …, 2021 - frontiersin.org
Vaccination is one of the most efficient public healthcare measures to fight infectious
diseases. Nevertheless, the immune mechanisms induced in vivo by vaccination are still …

Cytobank: providing an analytics platform for community cytometry data analysis and collaboration

TJ Chen, N Kotecha - High-dimensional single cell analysis: Mass …, 2014 - Springer
Cytometry is used extensively in clinical and laboratory settings to diagnose and track cell
subsets in blood and tissue. High-throughput, single-cell approaches leveraging cytometry …

Unraveling cell populations in tumors by single-cell mass cytometry

S Di Palma, B Bodenmiller - Current opinion in biotechnology, 2015 - Elsevier
Highlights•Single-cell mass cytometry enables analyses of heterogeneous cell
populations.•Mass-tag cellular barcoding increases multiplexing capability and sample …