Causes and consequences of apparent timescaling across all estimated evolutionary rates

LJ Harmon, MW Pennell, LF Henao-Diaz… - Annual Review of …, 2021 - annualreviews.org
Evolutionary rates play a central role in connecting micro-and macroevolution. All
evolutionary rate estimates, including rates of molecular evolution, trait evolution, and …

Conceptual and empirical advances in Neotropical biodiversity research

A Antonelli, M Ariza, J Albert, T Andermann, J Azevedo… - PeerJ, 2018 - peerj.com
The unparalleled biodiversity found in the American tropics (the Neotropics) has attracted
the attention of naturalists for centuries. Despite major advances in recent years in our …

mvmorph: an r package for fitting multivariate evolutionary models to morphometric data

J Clavel, G Escarguel… - Methods in Ecology and …, 2015 - Wiley Online Library
We present mvmorph, a package of multivariate phylogenetic comparative methods for the r
statistical environment. mvmorph is freely available on the cran package repository …

A cautionary note on the use of Ornstein Uhlenbeck models in macroevolutionary studies

N Cooper, GH Thomas, C Venditti… - Biological journal of …, 2016 - academic.oup.com
Phylogenetic comparative methods are increasingly used to give new insights into the
dynamics of trait evolution in deep time. For continuous traits the core of these methods is a …

Detecting signatures of selection on gene expression

PD Price, DH Palmer Droguett, JA Taylor… - Nature Ecology & …, 2022 - nature.com
A substantial amount of phenotypic diversity results from changes in gene expression levels
and patterns. Understanding how the transcriptome evolves is therefore a key priority in …

A cautionary note on “A cautionary note on the use of Ornstein Uhlenbeck models in macroevolutionary studies”

M Grabowski, J Pienaar, KL Voje… - Systematic …, 2023 - academic.oup.com
Abstract Models based on the Ornstein–Uhlenbeck process have become standard for the
comparative study of adaptation. have cast doubt on this practice by claiming statistical …

Extending phylogenetic regression models for comparing within‐species patterns across the tree of life

DC Adams, ML Collyer - Methods in Ecology and Evolution, 2024 - Wiley Online Library
Evolutionary biologists characterize macroevolutionary trends of phenotypic change across
the tree of life using phylogenetic comparative methods. However, within‐species variation …

Heterogeneous relationships between rates of speciation and body size evolution across vertebrate clades

CR Cooney, GH Thomas - Nature ecology & evolution, 2021 - nature.com
Several theories predict that rates of phenotypic evolution should be related to the rate at
which new lineages arise. However, drawing general conclusions regarding the coupling …

Pulsed evolution shaped modern vertebrate body sizes

MJ Landis, JG Schraiber - Proceedings of the National …, 2017 - National Acad Sciences
The relative importance of different modes of evolution in sha** phenotypic diversity
remains a hotly debated question. Fossil data suggest that stasis may be a common mode of …

A penalized likelihood framework for high-dimensional phylogenetic comparative methods and an application to new-world monkeys brain evolution

J Clavel, L Aristide, H Morlon - Systematic Biology, 2019 - academic.oup.com
Working with high-dimensional phylogenetic comparative data sets is challenging because
likelihood-based multivariate methods suffer from low statistical performances as the …