A review on the applications of next generation sequencing technologies as applied to food-related microbiome studies
Y Cao, S Fanning, S Proos, K Jordan… - Frontiers in …, 2017 - frontiersin.org
The development of next generation sequencing (NGS) techniques has enabled
researchers to study and understand the world of microorganisms from broader and deeper …
researchers to study and understand the world of microorganisms from broader and deeper …
Tetracyclines in food and feedingstuffs: from regulation to analytical methods, bacterial resistance, and environmental and health implications
F Granados-Chinchilla… - Journal of analytical …, 2017 - Wiley Online Library
Antibiotics are widely used as growth promoters in animal husbandry; among them, the
tetracyclines are a chemical group of relevance, due to their wide use in agriculture …
tetracyclines are a chemical group of relevance, due to their wide use in agriculture …
Role played by the environment in the emergence and spread of antimicrobial resistance (AMR) through the food chain
EFSA Panel on Biological Hazards (BIOHAZ)… - Efsa …, 2021 - Wiley Online Library
The role of food‐producing environments in the emergence and spread of antimicrobial
resistance (AMR) in EU plant‐based food production, terrestrial animals (poultry, cattle and …
resistance (AMR) in EU plant‐based food production, terrestrial animals (poultry, cattle and …
MEGARes: an antimicrobial resistance database for high throughput sequencing
Antimicrobial resistance has become an imminent concern for public health. As methods for
detection and characterization of antimicrobial resistance move from targeted culture and …
detection and characterization of antimicrobial resistance move from targeted culture and …
Complexities in understanding antimicrobial resistance across domesticated animal, human, and environmental systems
Antimicrobial resistance (AMR) is a significant threat to both human and animal health. The
spread of AMR bacteria and genes across systems can occur through a myriad of pathways …
spread of AMR bacteria and genes across systems can occur through a myriad of pathways …
Impact of sequencing depth on the characterization of the microbiome and resistome
Developments in high-throughput next generation sequencing (NGS) technology have
rapidly advanced the understanding of overall microbial ecology as well as occurrence and …
rapidly advanced the understanding of overall microbial ecology as well as occurrence and …
The fecal resistome of dairy cattle is associated with diet during nursing
Antimicrobial resistance is a global public health concern, and livestock play a significant
role in selecting for resistance and maintaining such reservoirs. Here we study the …
role in selecting for resistance and maintaining such reservoirs. Here we study the …
Antimicrobial usage and resistance in beef production
Antimicrobials are critical to contemporary high-intensity beef production. Many different
antimicrobials are approved for beef cattle, and are used judiciously for animal welfare, and …
antimicrobials are approved for beef cattle, and are used judiciously for animal welfare, and …
The present and future of whole genome sequencing (WGS) and whole metagenome sequencing (WMS) for surveillance of antimicrobial resistant microorganisms …
EA Oniciuc, E Likotrafiti, A Alvarez-Molina, M Prieto… - Genes, 2018 - mdpi.com
Antimicrobial resistance (AMR) surveillance is a critical step within risk assessment
schemes, as it is the basis for informing global strategies, monitoring the effectiveness of …
schemes, as it is the basis for informing global strategies, monitoring the effectiveness of …
Succinct de Bruijn graphs
We propose a new succinct de Bruijn graph representation. If the de Bruijn graph of k-mers
in a DNA sequence of length N has m edges, it can be represented in 4 m+ o (m) bits. This is …
in a DNA sequence of length N has m edges, it can be represented in 4 m+ o (m) bits. This is …