Pangenomic analysis identifies structural variation associated with heat tolerance in pearl millet

H Yan, M Sun, Z Zhang, Y **, A Zhang, C Lin, B Wu… - Nature Genetics, 2023 - nature.com
Pearl millet is an important cereal crop worldwide and shows superior heat tolerance. Here,
we developed a graph-based pan-genome by assembling ten chromosomal genomes with …

863 genomes reveal the origin and domestication of chicken

MS Wang, M Thakur, MS Peng, YU Jiang, LAF Frantz… - Cell research, 2020 - nature.com
Despite the substantial role that chickens have played in human societies across the world,
both the geographic and temporal origins of their domestication remain controversial. To …

Fourth report on chicken genes and chromosomes 2022

J Smith, JM Alfieri, N Anthony, P Arensburger… - … and genome research, 2023 - karger.com
The chicken continues to hold its position as a leading model organism within many areas of
research, as well as being a major source of protein for human consumption. The First …

[HTML][HTML] The study of selection signature and its applications on identification of candidate genes using whole genome sequencing data in chicken—a review

SF Bello, RA Lawal, AC Adeola, Q Nie - Poultry science, 2023 - Elsevier
Chicken is a major source of protein for the increasing human population and is useful for
research purposes. There are almost 1,600 distinct regional breeds of chicken across the …

Genome-wide population genetic analysis of commercial, indigenous, game, and wild chickens using 600K SNP microarray data

J Zhang, C Nie, X Li, Z Ning, Y Chen, Y Jia, J Han… - Frontiers in …, 2020 - frontiersin.org
Following chicken domestication, diversified chicken breeds were developed by both natural
and artificial selection, which led to the accumulation of abundant genetic and phenotypic …

Large-scale genomic analysis reveals the genetic cost of chicken domestication

MS Wang, JJ Zhang, X Guo, M Li, R Meyer, H Ashari… - BMC biology, 2021 - Springer
Background Species domestication is generally characterized by the exploitation of high-
impact mutations through processes that involve complex shifting demographics of …

Genomic inbreeding trends, influential sire lines and selection in the global Thoroughbred horse population

BA McGivney, H Han, LR Corduff, LM Katz, T Tozaki… - Scientific Reports, 2020 - nature.com
The Thoroughbred horse is a highly valued domestic animal population under strong
selection for athletic phenotypes. Here we present a high resolution genomics-based …

[HTML][HTML] The genomic characteristics affect phenotypic diversity from the perspective of genetic improvement of economic traits

J Chu, Y Ma, H Song, Q Zhao, X Wei, Y Yan, S Fan… - Iscience, 2023 - cell.com
The genetic improvement of economic traits suggests that chicken is an excellent model for
exploring the genetic changes and molecular mechanisms underlying phenotypic diversity …

A pangenome graph reference of 30 chicken genomes allows genoty** of large and complex structural variants

ES Rice, A Alberdi, J Alfieri, G Athrey, JR Balacco… - BMC biology, 2023 - Springer
Background The red junglefowl, the wild outgroup of domestic chickens, has historically
served as a reference for genomic studies of domestic chickens. These studies have …

Genetic diversity, demographic history, and selective signatures of Silkie chicken

R Huang, C Zhu, Y Zhen - BMC genomics, 2024 - Springer
Background Silkie is a traditional Chinese chicken breed characterized by its unique
combination of specialized morphological traits. While previous studies have focused on the …