Finding evolutionary processes hidden in cryptic species

TH Struck, JL Feder, M Bendiksby, S Birkeland… - Trends in Ecology & …, 2018 - cell.com
Cryptic species could represent a substantial fraction of biodiversity. However, inconsistent
definitions and taxonomic treatment of cryptic species prevent informed estimates of their …

ASAP: assemble species by automatic partitioning

N Puillandre, S Brouillet, G Achaz - Molecular Ecology …, 2021 - Wiley Online Library
Abstract Here, we describe Assemble Species by Automatic Partitioning (ASAP), a new
method to build species partitions from single locus sequence alignments (ie, barcode data …

Incomplete estimates of genetic diversity within species: Implications for DNA barcoding

JD Phillips, DJ Gillis, RH Hanner - Ecology and Evolution, 2019 - Wiley Online Library
DNA barcoding has greatly accelerated the pace of specimen identification to the species
level, as well as species delineation. Whereas the application of DNA barcoding to the …

The multispecies coalescent over-splits species in the case of geographically widespread taxa

EA Chambers, DM Hillis - Systematic Biology, 2020 - academic.oup.com
Many recent species delimitation studies rely exclusively on limited analyses of genetic data
analyzed under the multispecies coalescent (MSC) model, and results from these studies …

Guidelines for DNA taxonomy, with a focus on the meiofauna

D Fontaneto, JF Flot, CQ Tang - Marine Biodiversity, 2015 - Springer
Describing biological diversity is a challenging endeavour, especially for the small, cryptic
animals that make up the meiofauna. The field of DNA taxonomy, ie, the use of DNA to …

Taxonomy of Aspergillus series Versicolores: species reduction and lessons learned about intraspecific variability

F Sklenář, K Glässnerová, Ž Jurjević… - Studies in …, 2022 - ingentaconnect.com
Aspergillus series Versicolores members occur in a wide range of environments and
substrates such as indoor environments, food, clinical materials, soil, caves, marine or …

Reducing the number of accepted species in Aspergillus series Nigri

C Bian, Y Kusuya, F Sklenář, E D'hooge… - Studies in …, 2022 - ingentaconnect.com
The Aspergillus series Nigri contains biotechnologically and medically important species.
They can produce hazardous mycotoxins, which is relevant due to the frequent occurrence …

Phylogenomics and species delimitation for effective conservation of manta and devil rays

J Hosegood, E Humble, R Ogden… - Molecular …, 2020 - Wiley Online Library
Practical biodiversity conservation relies on delineation of biologically meaningful units.
Manta and devil rays (Mobulidae) are threatened worldwide, yet morphological similarities …

Speciation Hypotheses from Phylogeographic Delimitation Yield an Integrative Taxonomy for Seal Salamanders (Desmognathus monticola)

RA Pyron, KA O'Connell, SC Duncan… - Systematic …, 2023 - academic.oup.com
Significant advances have been made in species delimitation and numerous methods can
test precisely defined models of speciation, though the synthesis of phylogeography and …

Navigating the pitfalls and promise of landscape genetics

JL Richardson, SP Brady, IJ Wang, SF Spear - 2016 - Wiley Online Library
The field of landscape genetics has been evolving rapidly since its emergence in the early
2000s. New applications, techniques and criticisms of techniques appear like clockwork with …