Continuum solvation models

CJ Cramer, DG Truhlar - Solvent effects and chemical reactivity, 1996 - Springer
This chapter reviews the theoretical background for continuum models of solvation, recent
advances in their implementation, and illustrative examples of their use. Continuum models …

Hydrogen Bonding and Stacking of DNA Bases: A Review of Quantum-chemical ab initio Studies

J Šponer, J Leszczynski, P Hobza - Journal of Biomolecular …, 1996 - Taylor & Francis
Ab initio quantum-chemical calculations with inclusion of electron correlation made since
1994 (such reliable calculations were not feasible before) significantly modified our view on …

Singlet excited-state behavior of uracil and thymine in aqueous solution: a combined experimental and computational study of 11 uracil derivatives

T Gustavsson, A Bányász, E Lazzarotto… - Journal of the …, 2006 - ACS Publications
The excited-state properties of uracil, thymine, and nine other derivatives of uracil have been
studied by steady-state and time-resolved spectroscopy. The excited-state lifetimes were …

Structures and energies of hydrogen-bonded DNA base pairs. A nonempirical study with inclusion of electron correlation

J Šponer, J Leszczynski, P Hobza - The Journal of Physical …, 1996 - ACS Publications
Hydrogen bonding of DNA bases was investigated by reliable nonempirical ab initio
calculations. Gradient optimization was carried out on 30 DNA base pairs using the Hartree …

DNA base amino groups and their role in molecular interactions: Ab initio and preliminary density functional theory calculations

J Šponer, P Hobza - International Journal of Quantum …, 1996 - Wiley Online Library
Interactions of DNA bases frequently involve the DNA base amino groups. In contrast to the
empirical force fields, the ab initio calculations predict nonplanar DNA base amino groups …

Spontaneous DNA Mutations Induced by Proton Transfer in the Guanine⊙ Cytosine Base Pairs: An Energetic Perspective

J Florian, J Leszczyński - Journal of the American Chemical …, 1996 - ACS Publications
The energetic provisions for Löwdin's DNA mutational mechanism (Löwdin, PO Rev. Mod.
Phys. 1963, 35, 724) of the formation of substitution DNA mutations were investigated for the …

Anion spectroscopy of uracil, thymine and the amino-oxo and amino-hydroxy tautomers of cytosine and their water clusters

J Schiedt, R Weinkauf, DM Neumark, EW Schlag - Chemical Physics, 1998 - Elsevier
In this work we investigate different forms of electron binding in the mass-selected and
cooled nucleobases uracil, thymine and cytosine and their water clusters. In …

First Principles Calculation of pKa Values for 5-Substituted Uracils

YH Jang, LC Sowers, T Çaǧin… - The Journal of Physical …, 2001 - ACS Publications
Oxidation of uracil (U) and thymine (5-Me-U) are believed to play a role in genetic instability
because of the changes these oxidations cause in the ionization constants (p K a values) …

Weakly bound clusters of biological interest

C Desfrancois, S Carles, JP Schermann - Chemical reviews, 2000 - ACS Publications
Gas-phase studies concerning interactions between neutral or charged species in molecular
clusters allow for the investigation of the forces which govern structures and reaction …

The infrared spectra of uracil, thymine, and adenine in the gas phase

P Colarusso, KQ Zhang, B Guo, PF Bernath - Chemical Physics Letters, 1997 - Elsevier
The infrared spectra of gas-phase uracil, thymine, and adenine have been recorded from
100 to 3700 cm− 1 at a resolution of 1 cm− 1. The vibrational band positions and qualitative …